[med-svn] [augustus] annotated tag upstream/3.2.2+dfsg updated (e6d777d -> 1addced)
Sascha Steinbiss
sascha at steinbiss.name
Sat Apr 2 20:13:13 UTC 2016
This is an automated email from the git hooks/post-receive script.
sascha-guest pushed a change to annotated tag upstream/3.2.2+dfsg
in repository augustus.
*** WARNING: tag upstream/3.2.2+dfsg was modified! ***
from e6d777d (tag)
to 1addced (tag)
tagging 6746895d2d0b37634273403f4a6348a6fd81772f (commit)
replaces upstream/3.2.1+dfsg
tagged by Sascha Steinbiss
on Sat Apr 2 15:22:52 2016 +0000
- Log -----------------------------------------------------------------
Upstream version 3.2.2+dfsg
Sascha Steinbiss (2):
Imported Upstream version 3.2.2+dfsg
Imported Upstream version 3.2.2+dfsg
-----------------------------------------------------------------------
from 34e8559 Imported Upstream version 3.2.2+dfsg
adds 6746895 Imported Upstream version 3.2.2+dfsg
No new revisions were added by this update.
Summary of changes:
docs/CDS.sp.README | 10 +
docs/pipeline2gbrowser.txt | 41 +
docs/tutorial/augustus.css | 15 +
docs/tutorial/data/PF00171_full.txt | 611536 ++++++++++++++++++
docs/tutorial/data/PF00171_seed.txt | 1440 +
docs/tutorial/data/PF00225_full.blocks.txt | 22846 +
docs/tutorial/data/PF00225_full.txt | 7572 +
docs/tutorial/data/PF00225_seed.txt | 1044 +
docs/tutorial/data/PRINTS-example.txt | 722 +
docs/tutorial/data/allest.7M-8M.lst | 8458 +
docs/tutorial/data/allest.7M-8M.psl | 9073 +
docs/tutorial/data/augustus.abinitio.aa | 471 +
docs/tutorial/data/chr2R.2M-7M.aa | 8977 +
docs/tutorial/data/chr2R.2M-7M.fa | 100001 +++
docs/tutorial/data/chr2R.7M-8M.wig | 385677 +++++++++++
docs/tutorial/data/chr2R.fa | 422936 ++++++++++++
docs/tutorial/data/chr3.42M.fa | 25003 +
docs/tutorial/data/chr4.103M.fa | 25003 +
docs/tutorial/data/chr5.124M.fa | 25003 +
docs/tutorial/data/est.chr2R.7M-8M.fa | 61009 ++
docs/tutorial/data/est.psl | 10487 +
.../tutorial/data/extrinsic.bug.cfg | 58 +-
docs/tutorial/data/gff2browser.pl | 51 +
docs/tutorial/data/hints.rnaseq.intron.gff | 791 +
docs/tutorial/data/ppx.cfg | 13 +
docs/tutorial/data/sequence.fasta | 69467 ++
docs/tutorial/index.html | 115 +
docs/tutorial/ppx.html | 390 +
docs/tutorial/prediction.html | 422 +
docs/tutorial/results/PF00171.fbs.txt | 25 +
docs/tutorial/results/PF00171.prfl | 391 +
docs/tutorial/results/PF00171_seed.blocks.txt | 2160 +
docs/tutorial/results/PF00225.fbs.txt | 21 +
docs/tutorial/results/PF00225.prfl | 330 +
docs/tutorial/results/PF00225_seed.blocks.txt | 1305 +
docs/tutorial/results/PF00225_seed.prfl | 330 +
docs/tutorial/results/PR00249.fbs.txt | 16 +
docs/tutorial/results/PR00249.prfl | 259 +
docs/tutorial/results/abinitio-browser.gff | 26 +
docs/tutorial/results/abinitio.browser | 306 +
docs/tutorial/results/augustus-ppx.browser | 46 +
docs/tutorial/results/augustus-ppx.gff | 124 +
docs/tutorial/results/augustus.abinitio.gff | 1990 +
docs/tutorial/results/augustus.hints.gff | 18343 +
docs/tutorial/results/badgenes.lst | 8 +
docs/tutorial/results/est.f.psl | 8606 +
docs/tutorial/results/ests.browser.gz | Bin 0 -> 227184 bytes
docs/tutorial/results/genes.gb | 59961 ++
docs/tutorial/results/genes.gb.test | 11318 +
docs/tutorial/results/genes.gb.train | 48643 ++
docs/tutorial/results/hints.est.gff | 19002 +
docs/tutorial/results/hints.gff | 42264 ++
docs/tutorial/results/hints.rnaseq.ep.gff | 22471 +
docs/tutorial/results/output-abinitio.gff | 58 +
docs/tutorial/results/output-browser.gff | 46 +
docs/tutorial/results/output.gff | 124 +
docs/tutorial/results/prot.vs.genome.psl | 7291 +
docs/tutorial/results/scipio.browser | 6826 +
docs/tutorial/results/scipio.gff | 6823 +
docs/tutorial/results/scipio.yaml | 138401 ++++
docs/tutorial/results/withhints.browser | 685 +
docs/tutorial/scipio.html | 228 +
docs/tutorial/training.html | 434 +
docs/tutorial/tutorial.js | 37 +
64 files changed, 2197501 insertions(+), 28 deletions(-)
create mode 100644 docs/CDS.sp.README
create mode 100644 docs/pipeline2gbrowser.txt
create mode 100644 docs/tutorial/augustus.css
create mode 100644 docs/tutorial/data/PF00171_full.txt
create mode 100644 docs/tutorial/data/PF00171_seed.txt
create mode 100644 docs/tutorial/data/PF00225_full.blocks.txt
create mode 100644 docs/tutorial/data/PF00225_full.txt
create mode 100644 docs/tutorial/data/PF00225_seed.txt
create mode 100644 docs/tutorial/data/PRINTS-example.txt
create mode 100644 docs/tutorial/data/allest.7M-8M.lst
create mode 100644 docs/tutorial/data/allest.7M-8M.psl
create mode 100644 docs/tutorial/data/augustus.abinitio.aa
create mode 100644 docs/tutorial/data/chr2R.2M-7M.aa
create mode 100644 docs/tutorial/data/chr2R.2M-7M.fa
create mode 100644 docs/tutorial/data/chr2R.7M-8M.wig
create mode 100644 docs/tutorial/data/chr2R.fa
create mode 100644 docs/tutorial/data/chr3.42M.fa
create mode 100644 docs/tutorial/data/chr4.103M.fa
create mode 100644 docs/tutorial/data/chr5.124M.fa
create mode 100644 docs/tutorial/data/est.chr2R.7M-8M.fa
create mode 100644 docs/tutorial/data/est.psl
copy config/extrinsic/extrinsic.cfg => docs/tutorial/data/extrinsic.bug.cfg (80%)
create mode 100644 docs/tutorial/data/gff2browser.pl
create mode 100644 docs/tutorial/data/hints.rnaseq.intron.gff
create mode 100644 docs/tutorial/data/ppx.cfg
create mode 100644 docs/tutorial/data/sequence.fasta
create mode 100644 docs/tutorial/index.html
create mode 100644 docs/tutorial/ppx.html
create mode 100644 docs/tutorial/prediction.html
create mode 100644 docs/tutorial/results/PF00171.fbs.txt
create mode 100644 docs/tutorial/results/PF00171.prfl
create mode 100644 docs/tutorial/results/PF00171_seed.blocks.txt
create mode 100644 docs/tutorial/results/PF00225.fbs.txt
create mode 100644 docs/tutorial/results/PF00225.prfl
create mode 100644 docs/tutorial/results/PF00225_seed.blocks.txt
create mode 100644 docs/tutorial/results/PF00225_seed.prfl
create mode 100644 docs/tutorial/results/PR00249.fbs.txt
create mode 100644 docs/tutorial/results/PR00249.prfl
create mode 100644 docs/tutorial/results/abinitio-browser.gff
create mode 100644 docs/tutorial/results/abinitio.browser
create mode 100644 docs/tutorial/results/augustus-ppx.browser
create mode 100644 docs/tutorial/results/augustus-ppx.gff
create mode 100644 docs/tutorial/results/augustus.abinitio.gff
create mode 100644 docs/tutorial/results/augustus.hints.gff
create mode 100644 docs/tutorial/results/badgenes.lst
create mode 100644 docs/tutorial/results/est.f.psl
create mode 100644 docs/tutorial/results/ests.browser.gz
create mode 100644 docs/tutorial/results/genes.gb
create mode 100644 docs/tutorial/results/genes.gb.test
create mode 100644 docs/tutorial/results/genes.gb.train
create mode 100644 docs/tutorial/results/hints.est.gff
create mode 100644 docs/tutorial/results/hints.gff
create mode 100644 docs/tutorial/results/hints.rnaseq.ep.gff
create mode 100644 docs/tutorial/results/output-abinitio.gff
create mode 100644 docs/tutorial/results/output-browser.gff
create mode 100644 docs/tutorial/results/output.gff
create mode 100644 docs/tutorial/results/prot.vs.genome.psl
create mode 100644 docs/tutorial/results/scipio.browser
create mode 100644 docs/tutorial/results/scipio.gff
create mode 100644 docs/tutorial/results/scipio.yaml
create mode 100644 docs/tutorial/results/withhints.browser
create mode 100644 docs/tutorial/scipio.html
create mode 100644 docs/tutorial/training.html
create mode 100644 docs/tutorial/tutorial.js
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