[med-svn] [fsm-lite] 01/01: Add manpage

[Andreas Tille]

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tille pushed a commit to branch master
in repository fsm-lite.

commit 8be31683793c8ebea3c5a19d5395a4acd4853822
Author: Andreas Tille <tille at debian.org>
Date:   Fri Apr 8 21:29:36 2016 +0200

    Add manpage
---
 debian/control    |  2 +-
 debian/fsm-lite.1 | 46 ++++++++++++++++++++++++++++++++++++++++++++++
 debian/manpages   |  1 +
 3 files changed, 48 insertions(+), 1 deletion(-)

diff --git a/debian/control b/debian/control
index c999fd9..0c5cd5e 100644
--- a/debian/control
+++ b/debian/control
@@ -16,5 +16,5 @@ Depends: ${shlibs:Depends},
          ${misc:Depends}
 Description: frequency-based string mining (lite)
  A singe-core implementation of frequency-based substring mining used in
- ioinformatics to extract substrings that discriminate two (or more)
+ bioinformatics to extract substrings that discriminate two (or more)
  datasets inside high-throughput sequencing data.
diff --git a/debian/fsm-lite.1 b/debian/fsm-lite.1
new file mode 100644
index 0000000..be24cfa
--- /dev/null
+++ b/debian/fsm-lite.1
@@ -0,0 +1,46 @@
+.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.3.
+.TH FSM-LITE "1" "April 2016" "fsm-lite 0.0+20151109" "User Commands"
+.SH NAME
+fsm-lite \- Frequency-based String Mining
+.SH SYNOPSIS
+.B fsm\-lite
+\fB\-l\fR <file> \fB\-t\fR <file> [options]
+.SH DESCRIPTION
+A singe-core implementation of frequency-based substring mining used in
+bioinformatics to extract substrings that discriminate two (or more)
+datasets inside high-throughput sequencing data.
+.SH OPTIONS
+.SS mandatory:
+.TP
+\fB\-l\fR,\-\-list <file>
+Text file that lists all input files as whitespace\-separated pairs
+.IP
+<data\-name> <data\-filename>
+.IP
+where <data\-name> is unique identifier (without whitespace)
+and <data\-filename> is full path to each input file.
+Default data file format is FASTA (uncompressed).
+.TP
+\fB\-t\fR,\-\-tmp <file>
+Store temporary index data
+.SS "optional:"
+.TP
+\fB\-m\fR,\-\-min <int>
+Minimum length to report (default 9)
+.TP
+\fB\-M\fR,\-\-max <int>
+Maximum length to report (default 100)
+.TP
+\fB\-f\fR,\-\-freq <int>
+Minimum frequency per input file to report (default 1)
+.TP
+\fB\-s\fR,\-\-minsupp <int>
+Minimum number of input files with support to report (default 2)
+.TP
+\fB\-S\fR,\-\-maxsupp <int>
+Maximum number of input files with support to report (default inf)
+.TP
+\fB\-v\fR,\-\-verbose
+Verbose output
+.SH AUTHOR
+This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
diff --git a/debian/manpages b/debian/manpages
new file mode 100644
index 0000000..0f65186
--- /dev/null
+++ b/debian/manpages
@@ -0,0 +1 @@
+debian/*.1

-- 
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