[med-svn] r21680 - trunk/packages/R/r-cran-phylobase/trunk/debian

[Andreas Tille]

Author: tille
Date: 2016-04-09 12:09:58 +0000 (Sat, 09 Apr 2016)
New Revision: 21680

Added:
   trunk/packages/R/r-cran-phylobase/trunk/debian/README.source
Modified:
   trunk/packages/R/r-cran-phylobase/trunk/debian/changelog
   trunk/packages/R/r-cran-phylobase/trunk/debian/control
   trunk/packages/R/r-cran-phylobase/trunk/debian/copyright
   trunk/packages/R/r-cran-phylobase/trunk/debian/rules
Log:
Finalise packaging


Added: trunk/packages/R/r-cran-phylobase/trunk/debian/README.source
===================================================================
--- trunk/packages/R/r-cran-phylobase/trunk/debian/README.source	                        (rev 0)
+++ trunk/packages/R/r-cran-phylobase/trunk/debian/README.source	2016-04-09 12:09:58 UTC (rev 21680)
@@ -0,0 +1,22 @@
+Explanation for binary files inside source package according to
+  http://lists.debian.org/debian-devel/2013/09/msg00332.html
+
+The source packages contains some binary RData files which are
+documented inside the according manpages
+
+Files: data/geospiza.rda
+       data/geospiza_raw.rda
+Documentation: man/geospiza.Rd
+  Phylogenetic tree and morphological data for Darwin's finches, in different
+  formats. (Dolph Schluter, Luke Harmon)
+
+Files: data/owls4.rda
+Documentation: man/owls4.Rd
+  A tiny tree, for testing/example purposes, using one of the examples from
+  the r-cran-ape package.
+
+Files: inst/nexusfiles/ExContData.Rdata
+  This is just a saved session when running phylobase examples.
+  It can be loaded into R to verify its content.
+
+ -- Andreas Tille <tille at debian.org>  Tue, 22 Mar 2016 12:05:59 +0100

Modified: trunk/packages/R/r-cran-phylobase/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-phylobase/trunk/debian/changelog	2016-04-09 11:39:10 UTC (rev 21679)
+++ trunk/packages/R/r-cran-phylobase/trunk/debian/changelog	2016-04-09 12:09:58 UTC (rev 21680)
@@ -1,6 +1,5 @@
-r-cran-phylobase (0.8.2-1) UNRELEASED; urgency=low
+r-cran-phylobase (0.8.2-1) unstable; urgency=low
 
-  * Initial release (Closes: #<bug>)
-  TODO: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-rnexml/trunk/
+  * Initial release (Closes: #820520)
 
- -- Andreas Tille <tille at debian.org>  Tue, 22 Mar 2016 12:05:59 +0100
+ -- Andreas Tille <tille at debian.org>  Sat, 09 Apr 2016 13:54:52 +0200

Modified: trunk/packages/R/r-cran-phylobase/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-phylobase/trunk/debian/control	2016-04-09 11:39:10 UTC (rev 21679)
+++ trunk/packages/R/r-cran-phylobase/trunk/debian/control	2016-04-09 12:09:58 UTC (rev 21680)
@@ -5,13 +5,13 @@
 Priority: optional
 Build-Depends: debhelper (>= 9),
                cdbs,
-               r-base-dev
+               r-base-dev,
                r-cran-ape,
                r-cran-ade4,
                r-cran-rcpp,
                r-cran-rncl,
                r-cran-rnexml
-Standards-Version: 3.9.7
+Standards-Version: 3.9.8
 Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-phylobase/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-phylobase/trunk/
 Homepage: https://cran.r-project.org/web/packages/phylobase/

Modified: trunk/packages/R/r-cran-phylobase/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-phylobase/trunk/debian/copyright	2016-04-09 11:39:10 UTC (rev 21679)
+++ trunk/packages/R/r-cran-phylobase/trunk/debian/copyright	2016-04-09 12:09:58 UTC (rev 21680)
@@ -13,3 +13,21 @@
 Files: debian/*
 Copyright: 2016 Andreas Tille <tille at debian.org>
 License: GPL-2+
+
+License: GPL-2+
+    This program is free software; you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation; either version 2 of the License, or
+    (at your option) any later version.
+ .
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+ .
+    You should have received a copy of the GNU General Public License
+    along with this program; if not, write to the Free Software
+    Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
+ .
+ On Debian systems, the complete text of the GNU General Public
+ License can be found in `/usr/share/common-licenses/GPL-2'.

Modified: trunk/packages/R/r-cran-phylobase/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-phylobase/trunk/debian/rules	2016-04-09 11:39:10 UTC (rev 21679)
+++ trunk/packages/R/r-cran-phylobase/trunk/debian/rules	2016-04-09 12:09:58 UTC (rev 21680)
@@ -1,3 +1,6 @@
 #!/usr/bin/make -f
 
 include /usr/share/R/debian/r-cran.mk
+
+install/$(package)::
+	chmod -x $(debRlib)/$(cranName)/nexusfiles/co1.nex