[med-svn] [r-cran-nmf] 02/03: Initial packaging of r-cran-nmf
Alba Crespi
albac-guest at moszumanska.debian.org
Sat Apr 9 23:03:55 UTC 2016
This is an automated email from the git hooks/post-receive script.
albac-guest pushed a commit to branch master
in repository r-cran-nmf.
commit c530aa0f0cd683c6165a96546dde31767de781ea
Author: Alba Crespi <crespialba+debian at gmail.com>
Date: Sat Apr 9 23:58:14 2016 +0100
Initial packaging of r-cran-nmf
---
debian/README.source | 0
debian/changelog | 5 +++++
debian/compat | 1 +
debian/control | 29 +++++++++++++++++++++++++++++
debian/copyright | 41 +++++++++++++++++++++++++++++++++++++++++
debian/docs | 3 +++
debian/rules | 7 +++++++
debian/source/format | 1 +
debian/upstream/metadata | 32 ++++++++++++++++++++++++++++++++
debian/watch | 4 ++++
10 files changed, 123 insertions(+)
diff --git a/debian/README.source b/debian/README.source
new file mode 100644
index 0000000..e69de29
diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..f942f58
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+r-cran-nmf (0.20.6-1) UNRELEASED; urgency=low
+
+ * Initial release. (Closes: #XXXXXX)
+
+ -- Alba Crespi <crespialba+debian at gmail.com> Sat, 09 Apr 2016 23:17:47 +0100
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..88c04bd
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,29 @@
+Source: r-cran-nmf
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Alba Crespi <crespialba+debian at gmail.com>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+ cdbs,
+ r-base-dev (>= 3.0.0),
+ r-cran-pkgmaker (>= 0.20),
+ r-cran-registry,
+ r-cran-rngtools (>= 1.2.3),
+ r-cran-cluster
+Standards-Version: 3.9.7
+Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/r-cran-nmf.git
+Vcs-Git: https://anonscm.debian.org/git/debian-med/r-cran-nmf.git
+Homepage: http://cran.r-project.org/web/packages/NMF/
+
+Package: r-cran-nmf
+Architecture: any
+Depends: ${shlibs:Depends},
+ ${R:Depends},
+ ${misc:Depends}
+Description: GNU R framework to perform non-negative matrix factorization.
+ Implements a set of previously published algorithms and seeding methods,
+ and provides a framework to test, develop and plug new/custom algorithms.
+ Most of the built-in algorithms have been optimized, and the main interface
+ function provides parallel computations on multicore machines.
+
+
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..8fc324e
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,41 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: NMF
+Upstream-Contact: Renaud Gaujoux <renaud at tx.technion.ac.il>
+Source: https://cran.r-project.org/src/contrib/
+
+Files: *
+Copyright: 2010-2016 Renaud Gaujoux <renaud at tx.technion.ac.il> and Cathal Seoighe
+License: GPL-2.0+
+
+Files: R/utils.R
+ function CI.Rsqlm and CI.Rsq
+Copyright: Thomas D. Fletcher
+License: GPL-2.0
+
+Files: R/algorithms-base.R
+Copyright: 2004 Broad Institute/Massachusetts Institute of Technology
+
+Files: inst/m-files/brunet.m
+Copyright: 2004 Broad Institute/Massachusetts Institute of Technology
+
+Files: debian/*
+Copyright: 2016 Alba Crespi <crespialba+debian at gmail.com>
+License: GPL-2.0
+
+License: GPL-2.0+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".
+
diff --git a/debian/docs b/debian/docs
new file mode 100644
index 0000000..a1122b9
--- /dev/null
+++ b/debian/docs
@@ -0,0 +1,3 @@
+NEWS
+README.md
+
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..8af5489
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,7 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+
+export DEB_BUILD_HARDENING=1
+export DEB_BUILD_MAINT_OPTIONS = hardening=+all
+include /usr/share/R/debian/r-cran.mk
+
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
new file mode 100644
index 0000000..c071035
--- /dev/null
+++ b/debian/upstream/metadata
@@ -0,0 +1,32 @@
+ @Article{,
+ title = {A flexible R package for nonnegative matrix
+ factorization},
+ author = {Renaud Gaujoux and Cathal Seoighe},
+ journal = {BMC Bioinformatics},
+ year = {2010},
+ volume = {11},
+ number = {1},
+ pages = {367},
+ url = {http://www.biomedcentral.com/1471-2105/11/367},
+ doi = {10.1186/1471-2105-11-367},
+ issn = {1471-2105},
+ }
+
+ @Manual{,
+ title = {Using the package NMF},
+ author = {Renaud Gaujoux and Cathal Seoighe},
+ publisher = {CRAN},
+ year = {2015},
+ note = {R package version 0.20.6},
+ url = {http://cran.r-project.org/package=NMF},
+ }
+
+ @Manual{,
+ title = {The package NMF: manual pages},
+ author = {Renaud Gaujoux and Cathal Seoighe},
+ publisher = {CRAN},
+ year = {2015},
+ note = {R package version 0.20.6},
+ url = {http://cran.r-project.org/package=NMF},
+ }
+
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..da6fe73
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,4 @@
+version=3
+opts="uversionmangle=s/-/./" \
+https://cran.r-project.org/src/contrib/NMF_([-0-9\.]*)\.tar\.gz
+
--
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