[med-svn] [beagle] 03/04: Merge tag 'upstream/4.1_160222-8ef+dfsg'

[Dylan Aïssi]

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bob.dybian-guest pushed a commit to branch master
in repository beagle.

commit 2341009fefd852cc1d15016e2dc981bc269266ea
Merge: 2d9f148 7ef25aa
Author: Dylan Aïssi <bob.dybian at gmail.com>
Date:   Sun Apr 10 15:20:29 2016 +0200

    Merge tag 'upstream/4.1_160222-8ef+dfsg'
    
    Upstream version 4.1~160222-8ef+dfsg

 net/sf/samtools/Defaults.java                      |  49 --
 net/sf/samtools/FileTruncatedException.java        |  46 --
 net/sf/samtools/SAMException.java                  |  44 --
 net/sf/samtools/SAMFormatException.java            |  44 --
 net/sf/samtools/util/BinaryCodec.java              | 662 ---------------------
 .../util/BlockCompressedFilePointerUtil.java       | 101 ----
 .../samtools/util/BlockCompressedInputStream.java  | 484 ---------------
 .../samtools/util/BlockCompressedOutputStream.java | 312 ----------
 .../util/BlockCompressedStreamConstants.java       | 118 ----
 net/sf/samtools/util/BlockGunzipper.java           | 115 ----
 net/sf/samtools/util/HttpUtils.java                | 102 ----
 net/sf/samtools/util/IOUtil.java                   | 124 ----
 net/sf/samtools/util/RuntimeEOFException.java      |  46 --
 net/sf/samtools/util/RuntimeIOException.java       |  46 --
 net/sf/samtools/util/SeekableBufferedStream.java   |  90 ---
 net/sf/samtools/util/SeekableFileStream.java       |  69 ---
 net/sf/samtools/util/SeekableHTTPStream.java       | 153 -----
 net/sf/samtools/util/SeekableStream.java           |  37 --
 net/sf/samtools/util/StringUtil.java               | 460 --------------
 19 files changed, 3102 deletions(-)

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