[med-svn] [python-pbcore] 05/12: Mark patch as forwarded and slightly modify it

[Afif Elghraoui]

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afif pushed a commit to branch master
in repository python-pbcore.

commit 5ec2cc7ab0bcc9a369bbcbd94cf87f330122d305
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Mon Apr 11 22:05:32 2016 -0700

    Mark patch as forwarded and slightly modify it
---
 debian/patches/pysam-0.9.0.patch | 11 +++++++++--
 1 file changed, 9 insertions(+), 2 deletions(-)

diff --git a/debian/patches/pysam-0.9.0.patch b/debian/patches/pysam-0.9.0.patch
index 8cce199..9b1f8da 100644
--- a/debian/patches/pysam-0.9.0.patch
+++ b/debian/patches/pysam-0.9.0.patch
@@ -1,7 +1,7 @@
 Description: Fix compatibility with pysam 0.9.0
 Author: Afif Elghraoui <afif at debian.org>
-Forwarded: no
-Last-Update: 2016-03-10
+Forwarded: https://github.com/PacificBiosciences/pbcore/pull/86
+Last-Update: 2016-04-11
 --- python-pbcore.orig/pbcore/io/dataset/utils.py
 +++ python-pbcore/pbcore/io/dataset/utils.py
 @@ -127,11 +127,11 @@
@@ -18,3 +18,10 @@ Last-Update: 2016-03-10
      return fname + ".fai"
  
  def _mergeBams(inFiles, outFile):
+--- python-pbcore.orig/requirements.txt
++++ python-pbcore/requirements.txt
+@@ -1,3 +1,3 @@
+ numpy >= 1.7.1
+ h5py >= 2.0.1
+-pysam == 0.8.4
++pysam >= 0.9.0

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