[med-svn] [sprai] 07/12: Add a multi-manpage

[Afif Elghraoui]

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afif pushed a commit to branch master
in repository sprai.

commit 5d57b7c146d16e345562d85609064a5fa4f8c531
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Fri Apr 15 01:03:09 2016 -0700

    Add a multi-manpage
---
 debian/man/ezez4qsub_vx1.1    |  1 +
 debian/man/ezez4qsub_vx1.pl.1 |  1 +
 debian/man/ezez_vx1.1         |  1 +
 debian/man/ezez_vx1.pl.1      |  1 +
 debian/man/sprai.1            | 46 +++++++++++++++++++++++++++++++++++++++++++
 debian/manpages               |  1 +
 debian/rules                  |  3 +++
 7 files changed, 54 insertions(+)

diff --git a/debian/man/ezez4qsub_vx1.1 b/debian/man/ezez4qsub_vx1.1
new file mode 120000
index 0000000..36fc370
--- /dev/null
+++ b/debian/man/ezez4qsub_vx1.1
@@ -0,0 +1 @@
+sprai.1
\ No newline at end of file
diff --git a/debian/man/ezez4qsub_vx1.pl.1 b/debian/man/ezez4qsub_vx1.pl.1
new file mode 120000
index 0000000..36fc370
--- /dev/null
+++ b/debian/man/ezez4qsub_vx1.pl.1
@@ -0,0 +1 @@
+sprai.1
\ No newline at end of file
diff --git a/debian/man/ezez_vx1.1 b/debian/man/ezez_vx1.1
new file mode 120000
index 0000000..36fc370
--- /dev/null
+++ b/debian/man/ezez_vx1.1
@@ -0,0 +1 @@
+sprai.1
\ No newline at end of file
diff --git a/debian/man/ezez_vx1.pl.1 b/debian/man/ezez_vx1.pl.1
new file mode 120000
index 0000000..36fc370
--- /dev/null
+++ b/debian/man/ezez_vx1.pl.1
@@ -0,0 +1 @@
+sprai.1
\ No newline at end of file
diff --git a/debian/man/sprai.1 b/debian/man/sprai.1
new file mode 100644
index 0000000..5b6a279
--- /dev/null
+++ b/debian/man/sprai.1
@@ -0,0 +1,46 @@
+.TH SPRAI 1 "April 2016"
+.SH NAME
+SPRAI \- single-pass nucleotide sequencing read accuracy improvement
+.SH SYNOPSIS
+.B ezez_vx1
+.I ec.spec
+.RI { asm.spec \0|
+.BR -ec_only }
+.RI [ options ]
+.br
+.B ezez4qsub_vx1
+.I ec.spec
+.RI { asm.spec \0|
+.BR -ec_only }
+.RI [ options ]
+.SH DESCRIPTION
+Sprai is a tool to correct sequencing errors in single-pass reads for
+de novo assembly. It is originally designed for correcting sequencing
+errors in single-molecule DNA sequencing reads, especially in Continuous
+Long Reads (CLRs) generated by PacBio RS sequencers. The goal of Sprai is
+not maximizing the accuracy of error-corrected reads. Instead, Sprai aims
+at maximizing the continuity (i.e., N50 contig length) of assembled contigs
+after error correction.
+.SH OPTIONS
+.TP
+.B \-n
+Show parameters in
+.I ec.spec
+and exit.
+.TP
+.B \-ec_only
+Perform error correction only.
+With this option,
+.I asm.spec
+does not need to be passed in, as assembly is not performed.
+.TP
+.BI \-now \0yyyymmdd_hhmmss
+Use an existing
+.RI result _yyyymmdd_hhmmss
+directory from a previous run, detect unfinished jobs, and restart at the appropriate stage.
+.SH SEE ALSO
+.BR bash5tools (1)
+.br
+This program is part of sprai.
+See the sprai package documentation in /usr/share/doc/sprai,
+especially the example ec and pbasm spec files in /usr/share/doc/sprai/examples
diff --git a/debian/manpages b/debian/manpages
new file mode 100644
index 0000000..13cdaf4
--- /dev/null
+++ b/debian/manpages
@@ -0,0 +1 @@
+debian/man/*.1
diff --git a/debian/rules b/debian/rules
index c2f92fa..2600612 100755
--- a/debian/rules
+++ b/debian/rules
@@ -31,6 +31,9 @@ override_dh_install:
 	done
 	dh_install
 
+override_dh_installman:
+	dh_installman --language=C
+
 override_dh_auto_clean:
 	$(WAF) distclean
 	find waflib -name "*.pyc" -delete

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