[med-svn] [beagle] 02/03: Move examples to beagle-doc

[Dylan Aïssi]

This is an automated email from the git hooks/post-receive script.

bob.dybian-guest pushed a commit to branch master
in repository beagle.

commit 1920c8a62f41e3cebdc39f487d9fe9f5196e6684
Author: Dylan Aïssi <bob.dybian at gmail.com>
Date:   Sat Apr 16 09:54:45 2016 +0200

    Move examples to beagle-doc
---
 debian/beagle-doc.install |  3 +++
 debian/control            | 23 ++++++++++++++++++++---
 debian/examples           |  6 ------
 3 files changed, 23 insertions(+), 9 deletions(-)

diff --git a/debian/beagle-doc.install b/debian/beagle-doc.install
new file mode 100644
index 0000000..773452b
--- /dev/null
+++ b/debian/beagle-doc.install
@@ -0,0 +1,3 @@
+debian/tests/run-sample-analysis /usr/share/doc/beagle/examples/
+debian/upstream.docs/run.beagle.22Feb16.8ef.example /usr/share/doc/beagle/examples/
+debian/upstream.docs/test.22Feb16.8ef.vcf /usr/share/doc/beagle/examples/
diff --git a/debian/control b/debian/control
index 205ca23..1d2275a 100644
--- a/debian/control
+++ b/debian/control
@@ -3,10 +3,12 @@ Section: science
 Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Dylan Aïssi <bob.dybian at gmail.com>
-Build-Depends: debhelper (>= 9), javahelper
-Build-Depends-Indep: default-jdk, libhtsjdk-java
+Build-Depends: debhelper (>= 9),
+ javahelper
+Build-Depends-Indep: default-jdk,
+ libhtsjdk-java
 Testsuite: autopkgtest
-Standards-Version: 3.9.7
+Standards-Version: 3.9.8
 Vcs-Browser: https://anonscm.debian.org/git/debian-med/beagle.git
 Vcs-Git: https://anonscm.debian.org/git/debian-med/beagle.git
 Homepage: https://faculty.washington.edu/browning/beagle/beagle.html
@@ -15,6 +17,7 @@ Package: beagle
 Architecture: all
 Depends: ${java:Depends}, ${misc:Depends}
 Recommends: ${java:Recommends}
+Suggests: beagle-doc
 Description: Genotype calling, genotype phasing and imputation of ungenotyped markers
  Beagle performs genotype calling, genotype phasing, imputation of ungenotyped
  markers, and identity-by-descent segment detection. Genotypic imputation works
@@ -22,3 +25,17 @@ Description: Genotype calling, genotype phasing and imputation of ungenotyped ma
  Beagle also implements the Refined IBD algorithm for detecting
  homozygosity-by-descent (HBD) and identity-by-descent (IBD) segments.
 
+Package: beagle-doc
+Section: doc
+Architecture: all
+Depends: ${java:Depends}, ${misc:Depends}
+Recommends: ${java:Recommends}
+Enhances: beagle
+Description: Documentation for Beagle
+ Beagle performs genotype calling, genotype phasing, imputation of ungenotyped
+ markers, and identity-by-descent segment detection. Genotypic imputation works
+ on phased haplotypes using a Li and Stephens haplotype frequency model.
+ Beagle also implements the Refined IBD algorithm for detecting
+ homozygosity-by-descent (HBD) and identity-by-descent (IBD) segments.
+ .
+ This package includes the Beagle API javadocs, and examples.
diff --git a/debian/examples b/debian/examples
deleted file mode 100644
index 572d0d3..0000000
--- a/debian/examples
+++ /dev/null
@@ -1,6 +0,0 @@
-# Upstream samples files
-debian/upstream.docs/run.beagle.22Feb16.8ef.example
-debian/upstream.docs/test.22Feb16.8ef.vcf
-
-# Autopkgtest
-debian/tests/run-sample-analysis

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/beagle.git