[med-svn] [snakemake] branch master updated (08cd602 -> 8aaa682)
Kevin Murray
daube-guest at moszumanska.debian.org
Tue Apr 19 05:18:01 UTC 2016
This is an automated email from the git hooks/post-receive script.
daube-guest pushed a change to branch master
in repository snakemake.
from 08cd602 Document filenamemangle in d/changelog
new fa7a4fd Imported Upstream version 3.6.1+dfsg
new 568ba09 Merge tag 'upstream/3.6.1+dfsg'
new 72efb62 bump cl
new 8aaa682 Bump standards version
The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
CHANGELOG.md | 71 ++++++++++++
LICENSE => LICENSE.md | 2 +-
README => README.md | 2 +-
debian/changelog | 6 +
debian/control | 2 +-
misc/vim/syntax/snakemake.vim | 6 +-
setup.py | 2 +-
snakemake-tutorial.html | 2 +-
snakemake/__init__.py | 18 +--
snakemake/dag.py | 127 ++++++++++++---------
snakemake/exceptions.py | 18 +--
snakemake/executors.py | 26 +++--
snakemake/io.py | 106 ++++++++++-------
snakemake/jobs.py | 86 ++++++++------
snakemake/logging.py | 5 +-
snakemake/output_index.py | 8 +-
snakemake/parser.py | 8 +-
snakemake/persistence.py | 2 +
snakemake/remote/FTP.py | 12 +-
snakemake/remote/dropbox.py | 33 ++++--
snakemake/rules.py | 39 +++----
snakemake/script.py | 22 +++-
snakemake/shell.py | 2 +-
snakemake/version.py | 2 +-
snakemake/workflow.py | 7 ++
tests/test01/Snakefile | 5 +
tests/test_input_generator/Snakefile | 33 ++++++
.../test_input_generator/expected-results/foo.out1 | 3 +
.../test_input_generator/expected-results/foo.out2 | 3 +
.../test_input_generator/expected-results/foo.out3 | 3 +
tests/test_input_generator/foo.1.in | 1 +
tests/test_input_generator/foo.2.in | 1 +
tests/test_input_generator/foo.3.in | 1 +
tests/test_script/Snakefile | 5 +
tests/test_script/config.yaml | 1 +
tests/test_script/scripts/test.R | 6 +
tests/testapi.py | 13 +++
tests/tests.py | 3 +
38 files changed, 476 insertions(+), 216 deletions(-)
create mode 100644 CHANGELOG.md
rename LICENSE => LICENSE.md (94%)
rename README => README.md (88%)
create mode 100644 tests/test_input_generator/Snakefile
create mode 100644 tests/test_input_generator/expected-results/foo.out1
create mode 100644 tests/test_input_generator/expected-results/foo.out2
create mode 100644 tests/test_input_generator/expected-results/foo.out3
create mode 100644 tests/test_input_generator/foo.1.in
create mode 100644 tests/test_input_generator/foo.2.in
create mode 100644 tests/test_input_generator/foo.3.in
create mode 100644 tests/test_script/config.yaml
create mode 100644 tests/testapi.py
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