[med-svn] [smrtanalysis] 01/01: releasing package smrtanalysis version 0~20160416

Thu Apr 21 07:17:51 UTC 2016

This is an automated email from the git hooks/post-receive script.

afif pushed a commit to branch master
in repository smrtanalysis.

commit 16e619ab3c3eede449d3560efc0d05620be9a5d6
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Thu Apr 21 00:14:25 2016 -0700

    releasing package smrtanalysis version 0~20160416
---
 debian/changelog     |  5 +++++
 debian/compat        |  1 +
 debian/control       | 55 ++++++++++++++++++++++++++++++++++++++++++++++++++++
 debian/copyright     | 31 +++++++++++++++++++++++++++++
 debian/rules         |  6 ++++++
 debian/source/format |  1 +
 6 files changed, 99 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..b1ba457
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+smrtanalysis (0~20160416) unstable; urgency=medium
+
+  * Initial Release (Closes: #787977).
+
+ -- Afif Elghraoui <afif at debian.org>  Sat, 16 Apr 2016 19:21:02 -0700
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..8ebd6fa
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,55 @@
+Source: smrtanalysis
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Afif Elghraoui <afif at debian.org>
+Build-Depends: debhelper (>= 9)
+Standards-Version: 3.9.7
+Homepage: http://www.pacb.com/products-and-services/analytical-software/smrt-analysis/
+Vcs-Git: https://anonscm.debian.org/git/debian-med/smrtanalysis.git
+Vcs-Browser: https://anonscm.debian.org/git/debian-med/smrtanalysis.git
+
+Package: smrtanalysis
+Architecture: all
+Depends:
+	${misc:Depends},
+	pbh5tools,
+	pbbarcode,
+	pbalign,
+	blasr,
+	pbdagcon,
+	pbgenomicconsensus,
+	kineticstools,
+	falconkit,
+Description: software suite for single molecule, real-time sequencing
+ SMRT® Analysis is a powerful, open-source bioinformatics software suite
+ available for analysis of DNA sequencing data from Pacific Biosciences’
+ SMRT technology. Users can choose from a variety of analysis protocols that
+ utilize PacBio® and third-party tools. Analysis protocols include de novo
+ genome assembly, cDNA mapping, DNA base-modification detection, and
+ long-amplicon analysis to determine phased consensus sequences.
+ .
+ This is a metapackage that depends on the components of SMRT Analysis.
+
+Package: smrtanalysis-dev
+Section: libdevel
+Architecture: all
+Depends:
+	 ${misc:Depends},
+	 python-pbcore,
+	 python-pbcommand,
+	 python-pbconsensuscore | python3-pbconsensuscore,
+	 python-pbgenomicconsensus,
+	 python-pbh5tools,
+	 python-pbalign,
+	 libpbseq-dev,
+	 libpbbam-dev,
+Description: develepment libraries for smrtanalysis
+ SMRT® Analysis is a powerful, open-source bioinformatics software suite
+ available for analysis of DNA sequencing data from Pacific Biosciences’
+ SMRT technology. Users can choose from a variety of analysis protocols that
+ utilize PacBio® and third-party tools. Analysis protocols include de novo
+ genome assembly, cDNA mapping, DNA base-modification detection, and
+ long-amplicon analysis to determine phased consensus sequences.
+ .
+ This is a metapackage that depends on the SMRTAnalysis development tools.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..cffc5e7
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,31 @@
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: smrtanalysis
+
+Files: debian/*
+Copyright: 2016 Afif Elghraoui <afif at debian.org>
+License: BSD-3-Clause
+
+License: BSD-3-Clause
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions
+ are met:
+ 1. Redistributions of source code must retain the above copyright
+    notice, this list of conditions and the following disclaimer.
+ 2. Redistributions in binary form must reproduce the above copyright
+    notice, this list of conditions and the following disclaimer in the
+    documentation and/or other materials provided with the distribution.
+ 3. Neither the name of the University nor the names of its contributors
+    may be used to endorse or promote products derived from this software
+    without specific prior written permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+ ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT 
+ LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR 
+ A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO EVENT SHALL THE HOLDERS OR
+ CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, 
+ EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, 
+ PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR 
+ PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF 
+ LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING 
+ NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS 
+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..cd37a16
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,6 @@
+#!/usr/bin/make -f
+
+#export DH_VERBOSE = 1
+
+%:
+	dh $@ 
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..89ae9db
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (native)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/smrtanalysis.git

