[med-svn] [mia] 06/07: reimplement garbeled patch

[Gert Wollny]

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gert-guest pushed a commit to branch master
in repository mia.

commit c09cdabee7e4fe103f6e16c457adccee8d66649f
Author: Gert Wollny <gw.fossdev at gmail.com>
Date:   Mon Apr 25 10:25:07 2016 +0000

    reimplement garbeled patch
---
 debian/patches/01_spellcheck_corrections.patch | 66 ++++++++++++++++++++++++++
 1 file changed, 66 insertions(+)

diff --git a/debian/patches/01_spellcheck_corrections.patch b/debian/patches/01_spellcheck_corrections.patch
index ba9682f..9e7c7a2 100644
--- a/debian/patches/01_spellcheck_corrections.patch
+++ b/debian/patches/01_spellcheck_corrections.patch
@@ -5,3 +5,69 @@ Origin: upstream
 Forwarded: not-needed
 Last-Update: 2015-11-24
 
+--- a/mia/2d/filter/thresh.cc
++++ b/mia/2d/filter/thresh.cc
+@@ -70,7 +70,7 @@ C2DThreshNImageFilterFactory::C2DThreshNImageFilterFactory():
+ 	m_thresh(5.0)
+ {
+ 	add_parameter("shape", make_param(m_shape, "4n", false, "neighborhood shape to take into account")); 
+-	add_parameter("thresh", make_param(m_thresh, false, "The threshhold value"));
++	add_parameter("thresh", make_param(m_thresh, false, "The threshold value"));
+ }
+ 
+ C2DFilter *C2DThreshNImageFilterFactory::do_create()const
+@@ -80,8 +80,8 @@ C2DFilter *C2DThreshNImageFilterFactory::do_create()const
+ 
+ const std::string C2DThreshNImageFilterFactory::do_get_descr() const
+ {
+-	return  "This filter sets all pixels of an image to zero that fall below a certain threshhold and "
+-		"whose neighbours in a given neighborhood shape also fall below a this threshhold"; 
++	return  "This filter sets all pixels of an image to zero that fall below a certain threshold and "
++		"whose neighbours in a given neighborhood shape also fall below a this threshold"; 
+ }
+ 
+ extern "C" EXPORT CPluginBase *get_plugin_interface()
+--- mia-2.2.7.orig/mia/template/watershed.hh
++++ mia-2.2.7/mia/template/watershed.hh
+@@ -323,7 +323,7 @@ TWatershedFilterPlugin<dim>::TWatershedF
+ 	this->add_parameter("n", make_param(m_neighborhood, "sphere:r=1", false, "Neighborhood for watershead region growing")); 
+ 	this->add_parameter("mark", new mia::CBoolParameter(m_with_borders, false, "Mark the segmented watersheds with a special gray scale value")); 
+ 	this->add_parameter("thresh", make_coi_param(m_thresh, 0, 1.0, false, "Relative gradient norm threshold. The actual value "
+-						     "threshhold value is thresh * (max_grad - min_grad) + min_grad. Bassins "
++						     "threshold value is thresh * (max_grad - min_grad) + min_grad. Bassins "
+ 						     "separated by gradients with a lower norm will be joined"));  
+ 	this->add_parameter("evalgrad", new mia::CBoolParameter(m_eval_grad, false, "Set to 1 if the input image does "
+ 								"not represent a gradient norm image")); 
+--- mia-2.2.7.orig/src/2dgroundtruthreg.cc
++++ mia-2.2.7/src/2dgroundtruthreg.cc
+@@ -166,7 +166,7 @@ int do_main( int argc, char *argv[] )
+ 	options.add(make_opt( pgt_params.beta, "beta", 'B', "temporal second derivative penalty weight", 
+ 				    CCmdOptionFlags::required));
+ 	options.add(make_opt( pgt_params.rho_thresh, "rho_thresh", 'R', 
+-				    "crorrelation threshhold for neighborhood analysis", CCmdOptionFlags::required));
++				    "correlation threshold for neighborhood analysis", CCmdOptionFlags::required));
+ 
+ 
+ 	
+--- mia-2.2.7.orig/src/2dmyoicapgt.cc
++++ mia-2.2.7/src/2dmyoicapgt.cc
+@@ -480,7 +480,7 @@ int do_main( int argc, char *argv[] )
+ 	options.add(make_opt( pgt_alpha, "alpha", 'A', "spacial neighborhood penalty weight"));
+ 	options.add(make_opt( pgt_beta, "beta", 'B', "temporal second derivative penalty weight"));
+ 	options.add(make_opt( pgt_rho_thresh, "rho-thresh", 'T', 
+-				    "crorrelation threshhold for neighborhood analysis"));
++				    "correlation threshold for neighborhood analysis"));
+ 
+ 	
+ 		
+--- mia-2.2.7.orig/src/2dmyopgt-nonrigid.cc
++++ mia-2.2.7/src/2dmyopgt-nonrigid.cc
+@@ -147,7 +147,7 @@ int do_main( int argc, char *argv[] )
+ 	options.add(make_opt( alpha, "alpha", 'A', "spacial neighborhood penalty weight"));
+ 	options.add(make_opt( beta, "beta", 'B', "temporal second derivative penalty weight"));
+ 	options.add(make_opt( rho_thresh, "rho-thresh", 'R', 
+-				    "crorrelation threshhold for neighborhood analysis"));
++				    "correlation threshold for neighborhood analysis"));
+ 	options.add(make_opt( skip_images, "skip", 'k', "skip images at the beginning of the series "
+ 				    "e.g. because as they are of other modalities")); 
+ 	

-- 
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