[med-svn] [r-bioc-cummerbund] branch master updated (ac646e9 -> 4b6028c)

[Andreas Tille]

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tille pushed a change to branch master
in repository r-bioc-cummerbund.

      from  ac646e9   Upload to unstable
       new  1498ad5   Imported Upstream version 2.12.1
       new  eacb624   Merge tag 'upstream/2.12.1'
       new  42673d7   New upstream version
       new  927cb4e   cme fix dpkg-control
       new  4e467af   (hopefully) fix autopkgtest
       new  4b6028c   Upload to unstable

The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION                              |   4 +-
 R/methods-CuffData.R                     | 211 +++++++++++++++----------------
 R/methods-CuffFeatureSet.R               |   2 +-
 R/methods-CuffGene.R                     |   2 +-
 build/vignette.rds                       | Bin 303 -> 302 bytes
 debian/changelog                         |   8 ++
 debian/control                           |   4 +-
 debian/tests/run-unit-test               |   2 +-
 inst/doc/cummeRbund-example-workflow.pdf | Bin 169400 -> 198167 bytes
 inst/doc/cummeRbund-manual.pdf           | Bin 1360978 -> 1567910 bytes
 man/createDB.Rd                          |  36 ++++++
 11 files changed, 156 insertions(+), 113 deletions(-)
 create mode 100644 man/createDB.Rd

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