[med-svn] [bowtie2] branch master updated (7652674 -> b17d8ee)

[Alex Mestiashvili]

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malex-guest pushed a change to branch master
in repository bowtie2.

      from  7652674   d/changelog: Update, upload to unstable
      adds  0698da1   releasing package bowtie2 version 2.2.8-1
       new  cce9c2f   Imported Upstream version 2.2.9
       new  ce29a45   Merge tag 'upstream/2.2.9'
       new  fdd4f92   Bump Standards-Version
       new  b17d8ee   Update changelog

The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 MANUAL                         |  5 +++++
 MANUAL.markdown                | 10 ++++++++++
 Makefile                       |  3 ++-
 NEWS                           |  4 ++++
 VERSION                        |  2 +-
 aligner_seed.cpp               |  2 --
 blockwise_sa.h                 | 21 +++++++++++----------
 bt2_search.cpp                 |  4 ++--
 bt2_search.h                   |  4 ++--
 debian/changelog               |  7 +++++++
 debian/control                 |  2 +-
 debian/patches/hardening.patch |  6 +++---
 diff_sample.h                  |  2 +-
 doc/manual.html                | 20 +++++++++++++-------
 14 files changed, 62 insertions(+), 30 deletions(-)

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