[med-svn] [bowtie2] 02/04: Merge tag 'upstream/2.2.9'

[Alex Mestiashvili]

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malex-guest pushed a commit to branch master
in repository bowtie2.

commit ce29a45571e1a1affbdac8b4a9a1817193ef6be8
Merge: 0698da1 cce9c2f
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Thu Apr 28 09:25:12 2016 +0200

    Merge tag 'upstream/2.2.9'
    
    Upstream version 2.2.9

 MANUAL           |  5 +++++
 MANUAL.markdown  | 10 ++++++++++
 NEWS             |  4 ++++
 VERSION          |  2 +-
 aligner_seed.cpp |  2 --
 blockwise_sa.h   | 21 +++++++++++----------
 bt2_search.cpp   |  4 ++--
 bt2_search.h     |  4 ++--
 diff_sample.h    |  2 +-
 doc/manual.html  | 20 +++++++++++++-------
 10 files changed, 49 insertions(+), 25 deletions(-)

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