[med-svn] r21806 - in trunk/packages/R/r-bioc-snpstats/trunk/debian: . tests

[Andreas Tille]

Author: tille
Date: 2016-04-29 06:37:50 +0000 (Fri, 29 Apr 2016)
New Revision: 21806

Modified:
   trunk/packages/R/r-bioc-snpstats/trunk/debian/changelog
   trunk/packages/R/r-bioc-snpstats/trunk/debian/control
   trunk/packages/R/r-bioc-snpstats/trunk/debian/rules
   trunk/packages/R/r-bioc-snpstats/trunk/debian/tests/run-unit-test
   trunk/packages/R/r-bioc-snpstats/trunk/debian/watch
Log:
  * Fix autopkgtest
  * cme fix dpkg-control
  * d/watch: use xz compression



Modified: trunk/packages/R/r-bioc-snpstats/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-snpstats/trunk/debian/changelog	2016-04-29 06:18:21 UTC (rev 21805)
+++ trunk/packages/R/r-bioc-snpstats/trunk/debian/changelog	2016-04-29 06:37:50 UTC (rev 21806)
@@ -1,3 +1,11 @@
+r-bioc-snpstats (1.20.0+dfsg-2) unstable; urgency=medium
+
+  * Fix autopkgtest
+  * cme fix dpkg-control
+  * d/watch: use xz compression
+
+ -- Andreas Tille <tille at debian.org>  Fri, 29 Apr 2016 08:32:30 +0200
+
 r-bioc-snpstats (1.20.0+dfsg-1) unstable; urgency=medium
 
   * New upstream version

Modified: trunk/packages/R/r-bioc-snpstats/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-snpstats/trunk/debian/control	2016-04-29 06:18:21 UTC (rev 21805)
+++ trunk/packages/R/r-bioc-snpstats/trunk/debian/control	2016-04-29 06:37:50 UTC (rev 21806)
@@ -11,8 +11,8 @@
                r-cran-matrix,
                r-bioc-biocgenerics (>= 0.12.0),
                zlib1g-dev
-Standards-Version: 3.9.6
-Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-snpstats/trunk/
+Standards-Version: 3.9.8
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-snpstats/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-snpstats/trunk/
 Homepage: http://bioconductor.org/packages/release/bioc/html/snpStats.html
 

Modified: trunk/packages/R/r-bioc-snpstats/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-bioc-snpstats/trunk/debian/rules	2016-04-29 06:18:21 UTC (rev 21805)
+++ trunk/packages/R/r-bioc-snpstats/trunk/debian/rules	2016-04-29 06:37:50 UTC (rev 21806)
@@ -2,6 +2,3 @@
 
 debRreposname=bioc
 include /usr/share/R/debian/r-cran.mk
-
-get-orig-source:
-	uscan --verbose --force-download --repack --compress xz

Modified: trunk/packages/R/r-bioc-snpstats/trunk/debian/tests/run-unit-test
===================================================================
--- trunk/packages/R/r-bioc-snpstats/trunk/debian/tests/run-unit-test	2016-04-29 06:18:21 UTC (rev 21805)
+++ trunk/packages/R/r-bioc-snpstats/trunk/debian/tests/run-unit-test	2016-04-29 06:37:50 UTC (rev 21806)
@@ -1,7 +1,7 @@
 #!/bin/sh -e
 
 biocname=snpStats
-pkg=r-bioc-`echo $biocname | tr [A-Z] [a-z]`
+pkg=r-bioc-`echo $biocname | tr '[A-Z]' '[a-z]'`
 
 if [ "$ADTTMP" = "" ] ; then
   ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`

Modified: trunk/packages/R/r-bioc-snpstats/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-bioc-snpstats/trunk/debian/watch	2016-04-29 06:18:21 UTC (rev 21805)
+++ trunk/packages/R/r-bioc-snpstats/trunk/debian/watch	2016-04-29 06:37:50 UTC (rev 21806)
@@ -1,3 +1,3 @@
 version=3
-opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,downloadurlmangle=s?^(.*)\.\.?http:$1packages/release/bioc?" \
+opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,downloadurlmangle=s?^(.*)\.\.?http:$1packages/release/bioc?,repack,compression=xz" \
  http://www.bioconductor.org/packages/release/bioc/html/snpStats.html .*/snpStats_([\d\.]+)\.tar\.gz