[med-svn] r21823 - trunk/packages/theseus/trunk/debian

[Andreas Tille]

Author: tille
Date: 2016-04-29 12:05:00 +0000 (Fri, 29 Apr 2016)
New Revision: 21823

Modified:
   trunk/packages/theseus/trunk/debian/changelog
   trunk/packages/theseus/trunk/debian/control
   trunk/packages/theseus/trunk/debian/rules
Log:
  * Depends: muscle instead of Suggests since its usage in test suite
    seems to make this sensible.
  * cme fix dpkg-control
  * Remove Morten Kjeldgaard from uploaders who did not committed for 8 years
  * Better hardening



Modified: trunk/packages/theseus/trunk/debian/changelog
===================================================================
--- trunk/packages/theseus/trunk/debian/changelog	2016-04-29 09:29:33 UTC (rev 21822)
+++ trunk/packages/theseus/trunk/debian/changelog	2016-04-29 12:05:00 UTC (rev 21823)
@@ -1,3 +1,13 @@
+theseus (3.3.0-5) unstable; urgency=medium
+
+  * Depends: muscle instead of Suggests since its usage in test suite
+    seems to make this sensible.
+  * cme fix dpkg-control
+  * Remove Morten Kjeldgaard from uploaders who did not committed for 8 years
+  * Better hardening
+
+ -- Andreas Tille <tille at debian.org>  Fri, 29 Apr 2016 13:29:14 +0200
+
 theseus (3.3.0-4) unstable; urgency=medium
 
   * Enable building arch independent packages separately

Modified: trunk/packages/theseus/trunk/debian/control
===================================================================
--- trunk/packages/theseus/trunk/debian/control	2016-04-29 09:29:33 UTC (rev 21822)
+++ trunk/packages/theseus/trunk/debian/control	2016-04-29 12:05:00 UTC (rev 21823)
@@ -1,13 +1,12 @@
 Source: theseus
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Morten Kjeldgaard <mok0 at ubuntu.com>,
-           Andreas Tille <tille at debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
 Build-Depends: debhelper (>= 9),
                libgsl-dev
-Standards-Version: 3.9.6
-Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/theseus/trunk
+Standards-Version: 3.9.8
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/theseus/trunk
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/theseus/trunk/
 Homepage: http://www.theseus3d.org
 
@@ -15,10 +14,10 @@
 Architecture: any
 Depends: ${shlibs:Depends},
          ${misc:Depends},
-         clustalo
+         clustalo,
+         muscle
 Suggests: clustalw,
           mafft,
-          muscle,
           t-coffee,
           kalign,
           dialign,
@@ -39,10 +38,10 @@
 
 Package: theseus-examples
 Architecture: all
-Breaks: theseus (<= 3.0.0-1)
-Replaces: theseus (<= 3.0.0-1)
 Depends: ${misc:Depends}
 Enhances: theseus
+Breaks: theseus (<= 3.0.0-1)
+Replaces: theseus (<= 3.0.0-1)
 Description: superimpose macromolecules using maximum likelihood (examples)
  Theseus is a program that simultaneously superimposes multiple
  macromolecular structures. Theseus finds the optimal solution to the

Modified: trunk/packages/theseus/trunk/debian/rules
===================================================================
--- trunk/packages/theseus/trunk/debian/rules	2016-04-29 09:29:33 UTC (rev 21822)
+++ trunk/packages/theseus/trunk/debian/rules	2016-04-29 12:05:00 UTC (rev 21823)
@@ -5,6 +5,12 @@
 
 pkg=theseus
 
+# This
+#     export DEB_BUILD_MAINT_OPTIONS = hardening=+pie
+# leads to
+# /usr/bin/ld: theseus.o: relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC
+DEB_BUILD_MAINT_OPTIONS=hardening=+all,-pie
+
 %:
 	dh $@