[med-svn] [roary] 02/03: Merge tag 'upstream/3.6.8+dfsg'

[Sascha Steinbiss]

This is an automated email from the git hooks/post-receive script.

satta pushed a commit to branch master
in repository roary.

commit fcdecbf730079fd19a65e187797c7244f0d6a9c3
Merge: 41730a9 e3a3aeb
Author: Sascha Steinbiss <satta at debian.org>
Date:   Wed Aug 3 08:54:16 2016 +0000

    Merge tag 'upstream/3.6.8+dfsg'
    
    Upstream version 3.6.8+dfsg

 .travis.yml                                        |   10 +-
 Dockerfile                                         |   19 +
 README.md                                          |    7 +-
 dist.ini                                           |    2 +-
 install_dependencies.sh                            |   10 +-
 lib/Bio/Roary/ExtractProteomeFromGFF.pm            |   22 +-
 lib/Bio/Roary/GeneNamesFromGFF.pm                  |    8 +
 lib/Bio/Roary/Output/GroupsMultifastaNucleotide.pm |   27 +-
 t/Bio/Roary/AnnotateGroups.t                       |   17 +
 t/Bio/Roary/CommandLine/Roary.t                    |  174 +-
 t/Bio/Roary/ExtractProteomeFromGFFs.t              |   25 +
 t/data/allow_no_fasta_delimiter/annotation_1.gff   |  173 +
 .../annotation_1.gff.proteome.faa.expected         |   36 +
 t/data/allow_no_fasta_delimiter/annotation_2.gff   |  173 +
 .../annotation_2.gff.proteome.faa.expected         |   36 +
 t/data/expected_core_60_summary_statistics.txt     |    4 +-
 ...xpected_mafft_real_data_core_gene_alignment.aln |  924 ++---
 t/data/expected_real_data_core_gene_alignment.aln  | 4074 ++++++++++----------
 t/data/gene_name_field/annotation_1.gff            |  173 +
 t/data/gene_name_field/annotation_2.gff            |  173 +
 .../expected_reannotated_groups_file               |    8 +
 t/data/gene_name_field/groups                      |    8 +
 22 files changed, 3424 insertions(+), 2679 deletions(-)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/roary.git