[med-svn] [dindel] 01/01: fix FTBFS on GCC 6

[Sascha Steinbiss]

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satta pushed a commit to branch master
in repository dindel.

commit ca3f28d23d7cb5983644556b1c08a71f8aa7430d
Author: Sascha Steinbiss <satta at debian.org>
Date:   Wed Aug 3 17:35:57 2016 +0000

    fix FTBFS on GCC 6
---
 debian/changelog                         |  8 ++++++++
 debian/patches/fix-ftbfs-with-gcc6.patch | 13 +++++++++++++
 debian/patches/series                    |  1 +
 3 files changed, 22 insertions(+)

diff --git a/debian/changelog b/debian/changelog
index ac480d9..c6af74b 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,11 @@
+dindel (1.01+dfsg-2) unstable; urgency=medium
+
+  * Team upload.
+  * Fix FTBFS with GCC 6.
+    Closes: #831208
+
+ -- Sascha Steinbiss <satta at debian.org>  Wed, 03 Aug 2016 17:35:20 +0000
+
 dindel (1.01+dfsg-1) unstable; urgency=low
 
   * Initial release (Closes: #818605)
diff --git a/debian/patches/fix-ftbfs-with-gcc6.patch b/debian/patches/fix-ftbfs-with-gcc6.patch
new file mode 100644
index 0000000..3ff19fe
--- /dev/null
+++ b/debian/patches/fix-ftbfs-with-gcc6.patch
@@ -0,0 +1,13 @@
+Description: fix building with GCC 6
+Author: Sascha Steinbiss <satta at debian.org>
+--- a/Makefile
++++ b/Makefile
+@@ -2,7 +2,7 @@
+ SEQANDIR=/usr/include/seqan
+ 
+ CPPFLAGS+= -DNDEBUG -D_IOLIB=2 -DMINREADS=2 -DDINDEL
+-CXXFLAGS+= -I$(SAMTOOLDIR) -I$(SEQANDIR) -I./  -Wno-deprecated  -O3 
++CXXFLAGS+= -I$(SAMTOOLDIR) -I$(SEQANDIR) -I./  -Wno-deprecated  -O3 -std=gnu++98
+ LDFLAGS+=  -lbam -lz -lboost_program_options -lpthread
+ 
+ SRCSDINDEL=DInDel.cpp HapBlock.cpp HaplotypeDistribution.cpp ObservationModelFB.cpp GetCandidates.cpp Faster.cpp
diff --git a/debian/patches/series b/debian/patches/series
index a24c5c4..8fb20f6 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,2 +1,3 @@
 modernize-Makefile.patch
 compiler_errors.patch
+fix-ftbfs-with-gcc6.patch

-- 
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