[med-svn] [cd-hit] branch master created (now 05bf54e)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository cd-hit.

        at  05bf54e   Moved from SVN to Git

This branch includes the following new commits:

       new  c57fcf3   Create packaging dir for cd-hit (and commit uncommited change of qiime/README.source)
       new  1f45427   Commit packaging stuff for cd-hit
       new  51aa135   Added ITP bug #, new upstream; waiting for decision about source for documentation
       new  8087dd7   Added source for documentation; wrote two manpages (more are needed); docbase; upload to unstable
       new  9fb7909   mergeWithUpstream set automatically
       new  bf0db1a   Renamed debian/upstream-metadata.yaml to debian/upstream.
       new  eae8d4b   debian/upstream: Moved DOI and PMID to the Reference namespace.
       new  6497b4d   Corrected the files that did not validate with YAML::XS.
       new  7e093bd   Document rename of upstream-metadata.yaml
       new  9e46f2a   Fixed watch file
       new  4dbc2d8   Forgot to commit this explanation in SVN (it was part of latest source release)
       new  bebb959   New upstream version
       new  d848b74   Bumped standards-version
       new  d2e5123   DEP5 verified and fixed (cme fix dpkg-copyright)
       new  2c43dd9   Fix gcc-4.7 build issue
       new  7f9eef1   Enhance citation information
       new  5f50e3f   Debhelper 9; upload to unstable
       new  6a12b42   New upstream version (patches applied, source for documentation included)
       new  fb97a24   Make sure hardening flags are propagated
       new  afedb86   Use MPI version of cd-hit
       new  5ad0c00   Use help2man in build process to get more manpages; drop manually enhanced previous manpages (the difference is that sections "SEE ALSO" and "AUTHOR" are not specificall marked but we have eight manpages always up to date more)
       new  53e7713   New upstream version with adapted patches; cme fix dpkg-control
       new  5907804   anonscm and upload to unstable
       new  e0bec16   A user was asking for cdhit-454, so I went to backport the latest version into Bio-Linux, and added the link for this binary in the process. Also, I couldn't see any need for OpenMPI (!= openmp), so removed the dep.
       new  679e70d   Take over changes from BioLinux and upload
       new  4840e50   Move debian/upstream to debian/upstream/metadata
       new  35d5c3c   New upstream version, Adapted d/watch to move from google code to Github
       new  5d61d0f   Remove redundant remark from author about LaTeX source of doc
       new  0129689   cme fix dpkg-control
       new  fccc41a   Update debian/copyright
       new  68c4e65   Some tools do not generate a help2man output any more
       new  d59a9ab   New upstream version
       new  1e84e06     * Remove links to scripts that were removed in this version     Closes: #825582   * cme fix dpkg-control   * Better hardening
       new  9e6ec7b   Imported Upstream version 4.6.5
       new  74e3fde   Merge tag 'upstream/4.6.5'
       new  20e4620   Re-add debian/ dir
       new  05bf54e   Moved from SVN to Git

The 37 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


-- 
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