[med-svn] [trinityrnaseq] annotated tag debian/2.2.0+dfsg-2 created (now b929010)

[Sascha Steinbiss]

This is an automated email from the git hooks/post-receive script.

satta pushed a change to annotated tag debian/2.2.0+dfsg-2
in repository trinityrnaseq.

        at  b929010   (tag)
   tagging  b1f8d6f5158e96cee6c29c69f57e4309b20ea264 (commit)
  replaces  upstream/2.2.0+dfsg
 tagged by  Sascha Steinbiss
        on  Fri Aug 5 19:53:02 2016 +0000

- Log -----------------------------------------------------------------
trinityrnaseq Debian release 2.2.0+dfsg-2
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Andreas Tille (9):
      cme fix dpkg-control
      While Files-Excluded was perfectly correct I consider it way more readable to specify one excluded item per line
      In some cases help2man has poor results - here it was the case.  So I did some (boring) manual editing
      We are excluding files so flag this by adding +dfsg to the version
      small typo
      Fix JSON syntax - continued lines need to start with ' >'
      Upload to unstable
      Upload to unstable
      d/watch: Use xz compression for upstream source

Michael R. Crusoe (68):
      Merge tag 'upstream/2.0.2'
      initial debianization
      packaging cleanup
      Merge tag 'upstream/2.0.2'
      add autotools dep
      update VCS
      use system jellyfish binary
      follow original layout
      build Butterfly
      Butterfly
      more Jellyfish path fixes
      include Analysis directory
      include postinstall tests
      cme fix
      update deps; thank you pbuilder
      ship the docs; close ITP; update deps
      don't forget perl depends
      manpage; mark scripts +x
      add watch; properly exclude files
      Imported Upstream version 2.0.3+dfsg
      bump version & clarify copyrights
      parafly, transdecoder, and JUNG have been split out
      switch to tbooth's package of jaligner
      work around uscan bug
      Merge tag 'upstream/2.0.4+dfsg'
      update patches for 2.0.4
      curl is now needed to check version
      libjung-java now relies on collections4
      describe patches
      Merge tag 'upstream/2.0.6+dfsg'
      version bump
      build-dep update libjung-free-java, automake, jaligner, libjs-jquery
      correct the tests location; use debian-med bin & new name for express
      add patch to cope with path changes
      add hardening
      add more reproducibility
      split out example data to another package
      Remove remaining lintian overrides
      Merge tag 'upstream/2.1.1+dfsg'
      bump version, refresh patches
      update excludes; add std gbp.conf
      Merge tag 'upstream/2.1.1+dfsg'
      reorg copyright
      fix tests & restore Inchworm
      build the scaffold_iworm_contigs tool
      add citation as per Trinity --cite
      switch to bowtie2; disable version check
      sigh, make a TODO list
      skip the kallisto test
      adjust path to trimmomatic adapters
      skip DESeq2 test
      add bowtie dependency & update trimmomatic path
      fix typos & update patch descriptions
      VCS URL secured
      drop extra files, ship more docs
      Merge tag 'upstream/2.1.1+dfsg'
      fix cc-by-sa-3.0
      copyright tweak
      Split install of arch-dependent & arch-independent files, fixes FTBFS
      improve hardening & drop galaxy plugin
      Merge tag 'upstream/2.1.1+dfsg'
      Release and upload.
      Merge tag 'upstream/2.1.1+dfsg2'
      increment dfsg version to account for orig tarball change
      fix local version mangle & update excludes
      Merge tag 'upstream/2.2.0+dfsg'
      new upstream release
      release to unstable

Olivier Sallou (1):
      add GCC5 patches

Sascha Steinbiss (2):
      Merge branch 'master' of ssh://git.debian.org/git/debian-med/trinityrnaseq
      fix build on GCC6

Steffen Moeller (2):
      Added ref to SEQanswer's Wiki
      Added ref to SEQanswer's Wiki

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