[med-svn] [gubbins] branch master updated (4ec19bf -> 2861349)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository gubbins.

      from  4ec19bf   dch -r
       new  63f5943   Imported Upstream version 2.1.0
       new  e7877d3   Merge tag 'upstream/2.1.0'
       new  2861349   New upstream release - but one error in build time test

The 3 revisions listed above as "new" are entirely new to this
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listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 CHANGELOG                                          |  5 ++
 INSTALL.md                                         |  2 +
 VERSION                                            |  2 +-
 debian/changelog                                   | 22 ++++++
 python/gubbins/RAxMLExecutable.py                  | 12 +++-
 python/gubbins/common.py                           |  2 +-
 .../input_alignment.fasta                          |  2 +-
 python/gubbins/tests/test_external_dependancies.py |  1 +
 python/scripts/run_gubbins.py                      |  2 +
 src/branch_sequences.c                             | 83 +++++++---------------
 src/branch_sequences.h                             |  1 -
 src/string_cat.c                                   |  9 +--
 tests/check_branch_sequences.c                     | 18 ++---
 13 files changed, 75 insertions(+), 86 deletions(-)

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