[med-svn] [eigensoft] 01/03: Imported Upstream version 6.1.3+dfsg

[Andreas Tille]

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tille pushed a commit to branch master
in repository eigensoft.

commit b645e4b585c6a57e67120cc6b4e4eff7f1802c23
Author: Andreas Tille <tille at debian.org>
Date:   Fri Aug 5 23:39:32 2016 +0200

    Imported Upstream version 6.1.3+dfsg
---
 .gitignore                                       | 32 ++++++++++++++++++++++++
 README                                           |  5 +++-
 bin/{evec2pca-ped.pl => evec2pca-ped.perl}       |  0
 bin/{evec2pca.pl => evec2pca.perl}               |  0
 bin/{gc.pl => gc.perl}                           |  0
 bin/{smarteigenstrat.pl => smarteigenstrat.perl} |  0
 bin/{smartpca.pl => smartpca.perl}               |  0
 7 files changed, 36 insertions(+), 1 deletion(-)

diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..bbf313b
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,32 @@
+# Object files
+*.o
+*.ko
+*.obj
+*.elf
+
+# Precompiled Headers
+*.gch
+*.pch
+
+# Libraries
+*.lib
+*.a
+*.la
+*.lo
+
+# Shared objects (inc. Windows DLLs)
+*.dll
+*.so
+*.so.*
+*.dylib
+
+# Executables
+*.exe
+*.out
+*.app
+*.i*86
+*.x86_64
+*.hex
+
+# Debug files
+*.dSYM/
diff --git a/README b/README
index 0166f7d..2ffa017 100644
--- a/README
+++ b/README
@@ -1,10 +1,13 @@
-EIGENSOFT version 6.1.2, 6/27/16 (for Linux only)
+EIGENSOFT version 6.1.3, 7/29/16 (for Linux only)
 
 The EIGENSOFT package implements methods from the following 3 papers:
 Patterson et al. 2006 PLoS Genet (population structure)
 Price et al. 2006 Nat Genet (EIGENSTRAT stratification correction)
 Galinsky et al. 2016 Am J Hum Genet (FastPCA and PC-based selection statistic)
 
+NEW features of EIGENSOFT version 6.1.3 include:
+-- Restored script file extensions to .perl instead of .pl
+
 NEW features of EIGENSOFT version 6.1.2 include:
 -- Updated license info to be GPL compliant required by linking the GSL
 
diff --git a/bin/evec2pca-ped.pl b/bin/evec2pca-ped.perl
similarity index 100%
rename from bin/evec2pca-ped.pl
rename to bin/evec2pca-ped.perl
diff --git a/bin/evec2pca.pl b/bin/evec2pca.perl
similarity index 100%
rename from bin/evec2pca.pl
rename to bin/evec2pca.perl
diff --git a/bin/gc.pl b/bin/gc.perl
similarity index 100%
rename from bin/gc.pl
rename to bin/gc.perl
diff --git a/bin/smarteigenstrat.pl b/bin/smarteigenstrat.perl
similarity index 100%
rename from bin/smarteigenstrat.pl
rename to bin/smarteigenstrat.perl
diff --git a/bin/smartpca.pl b/bin/smartpca.perl
similarity index 100%
rename from bin/smartpca.pl
rename to bin/smartpca.perl

-- 
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