[med-svn] [r-cran-vegan] branch master updated (70344d5 -> ba3b1e3)
Andreas Tille
tille at debian.org
Mon Aug 8 08:35:04 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository r-cran-vegan.
from 70344d5 Remove copyright information of removed file and upload to unstable
new d118e5b Imported Upstream version 2.4-0
new fc150fb Merge tag 'upstream/2.4-0'
new 7a27254 New upstream version
new 9a49e61 Versioned Build-Depends r-cran-permute (>= 0.8.3)
new ba3b1e3 Upload to unstable
The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
DESCRIPTION | 17 +--
MD5 | 293 ++++++++++++++++++++++---------------------
NAMESPACE | 31 +++--
R/GowerDblcen.R | 48 +++++++
R/MDSrotate.R | 13 ++
R/RsquareAdj.R | 22 +---
R/adipart.default.R | 9 +-
R/adipart.formula.R | 11 +-
R/adonis2.R | 109 ++++++++++++++++
R/anova.cca.R | 2 +-
R/anova.ccabyterm.R | 36 +++++-
R/anova.ccalist.R | 2 +-
R/anova.ccanull.R | 2 +-
R/as.fisher.R | 4 +-
R/as.mcmc.oecosimu.R | 40 +++++-
R/as.ts.oecosimu.R | 5 +-
R/betadisper.R | 19 ++-
R/betadiver.R | 2 +-
R/calibrate.cca.R | 7 ++
R/capscale.R | 64 +++++++---
R/contribdiv.R | 2 +
R/dbrda.R | 252 +++++++++++++++++++++++++++++++++++++
R/decorana.R | 6 +-
R/designdist.R | 13 +-
R/deviance.rda.R | 2 +-
R/eigenvals.R | 22 +++-
R/eventstar.R | 6 +-
R/extractAIC.cca.R | 6 +-
R/fitted.capscale.R | 18 ++-
R/fitted.dbrda.R | 54 ++++++++
R/goodness.cca.R | 118 ++++++++---------
R/hiersimu.default.R | 9 +-
R/hiersimu.formula.R | 10 +-
R/inertcomp.R | 60 +++++----
R/intersetcor.R | 3 +-
R/lines.spantree.R | 8 +-
R/make.commsim.R | 86 ++++++++++---
R/metaMDS.R | 16 ++-
R/metaMDSdist.R | 5 +-
R/metaMDSiter.R | 37 ++++--
R/monoMDS.R | 6 +-
R/mso.R | 4 +-
R/multipart.default.R | 7 +-
R/multipart.formula.R | 10 +-
R/nesteddisc.R | 28 ++---
R/nobs.R | 4 +-
R/oecosimu.R | 17 ++-
R/oldCapscale.R | 30 +++++
R/ordiGetData.R | 2 +-
R/ordiR2step.R | 20 ++-
R/ordiareatest.R | 8 +-
R/ordiarrows.R | 18 ++-
R/ordibar.R | 80 ++++++++++++
R/ordicluster.R | 19 ++-
R/ordiellipse.R | 91 +++++++++++---
R/ordihull.R | 77 +++++++++---
R/ordisegments.R | 11 +-
R/ordispider.R | 20 ++-
R/pcnm.R | 14 +--
R/permustats.R | 86 +++++++++++--
R/permutest.cca.R | 43 +++++--
R/plot.betadisper.R | 87 ++++++++++---
R/plot.isomap.R | 6 +
R/plot.spantree.R | 16 ++-
R/plot.specaccum.R | 6 +-
R/points.orditkplot.R | 7 +-
R/postMDS.R | 7 +-
R/predict.rda.R | 58 ++++++---
R/print.capscale.R | 9 --
R/print.cca.R | 47 ++++---
R/print.simmat.R | 10 +-
R/print.varpart.R | 6 +-
R/print.varpart234.R | 10 +-
R/print.wcmdscale.R | 2 +
R/rarecurve.R | 2 +
R/renyi.R | 12 +-
R/scores.betadisper.R | 4 +-
R/scores.rda.R | 16 ++-
R/simpleRDA2.R | 19 ++-
R/simulate.nullmodel.R | 18 +--
R/simulate.rda.R | 11 ++
R/smbind.R | 170 +++++++++++++++++++++++++
R/spenvcor.R | 4 +-
R/stressplot.wcmdscale.R | 113 +++++++++++++++--
R/summary.ordiellipse.R | 4 +-
R/summary.ordihull.R | 2 +-
R/text.orditkplot.R | 11 +-
R/update.nullmodel.R | 1 +
R/varpart.R | 58 +++++++--
R/varpart2.R | 15 ++-
R/varpart3.R | 15 ++-
R/varpart4.R | 15 ++-
R/vegan-defunct.R | 74 ++++++++++-
R/vegan-deprecated.R | 188 +--------------------------
R/wascores.R | 6 +-
R/wcmdscale.R | 22 +++-
R/weights.rda.R | 4 +-
build/partial.rdb | Bin 0 -> 21794 bytes
data/BCI.env.rda | Bin 337 -> 705 bytes
data/BCI.rda | Bin 8503 -> 8759 bytes
debian/changelog | 7 ++
debian/control | 4 +-
inst/NEWS.Rd | 216 +++++++++++++++++++++++++++++++
inst/doc/decision-vegan.R | 30 ++---
inst/doc/decision-vegan.Rnw | 141 +++++++++------------
inst/doc/decision-vegan.pdf | Bin 342272 -> 340954 bytes
inst/doc/diversity-vegan.pdf | Bin 365179 -> 365970 bytes
inst/doc/intro-vegan.R | 42 ++++---
inst/doc/intro-vegan.Rnw | 16 +--
inst/doc/intro-vegan.pdf | Bin 234604 -> 238817 bytes
inst/doc/partitioning.pdf | Bin 137301 -> 137524 bytes
man/BCI.Rd | 76 ++++++++---
man/MDSrotate.Rd | 28 ++++-
man/RsquareAdj.Rd | 17 ++-
man/adipart.Rd | 32 +++--
man/adonis.Rd | 198 +++++++++++++----------------
man/anosim.Rd | 4 +-
man/betadisper.Rd | 49 +++++++-
man/betadiver.Rd | 21 ++--
man/capscale.Rd | 204 +++++++++++++++---------------
man/cca.object.Rd | 65 +++++++++-
man/commsim.Rd | 157 +++++++++++++----------
man/decorana.Rd | 14 +--
man/designdist.Rd | 38 ++++--
man/envfit.Rd | 2 +-
man/isomap.Rd | 12 +-
man/linestack.Rd | 2 +-
man/metaMDS.Rd | 71 ++++++++---
man/monoMDS.Rd | 37 ++++++
man/mrpp.Rd | 4 +-
man/multipart.Rd | 101 +++++++++------
man/nullmodel.Rd | 126 ++++++++++++++++---
man/ordiarrows.Rd | 18 ++-
man/ordihull.Rd | 118 +++++++++++------
man/ordipointlabel.Rd | 8 +-
man/ordistep.Rd | 39 +++---
man/ordisurf.Rd | 2 +-
man/orditkplot.Rd | 20 +--
man/ordixyplot.Rd | 2 +-
man/permustats.Rd | 63 +++++++---
man/permutest.betadisper.Rd | 4 +-
man/plot.cca.Rd | 2 +-
man/predict.cca.Rd | 3 +-
man/spantree.Rd | 15 ++-
man/specaccum.Rd | 6 +-
man/stressplot.wcmdscale.Rd | 14 ++-
man/varpart.Rd | 144 ++++++++++++++-------
man/vegan-defunct.Rd | 38 ++++--
man/vegan-deprecated.Rd | 72 +----------
man/vegan-internal.Rd | 18 +++
man/wcmdscale.Rd | 36 ++++--
src/nestedness.c | 138 ++++++++++++++++----
vignettes/decision-vegan.Rnw | 141 +++++++++------------
vignettes/intro-vegan.Rnw | 16 +--
154 files changed, 3974 insertions(+), 1776 deletions(-)
create mode 100644 R/GowerDblcen.R
create mode 100644 R/adonis2.R
create mode 100644 R/dbrda.R
create mode 100644 R/fitted.dbrda.R
create mode 100644 R/oldCapscale.R
create mode 100644 R/ordibar.R
delete mode 100644 R/print.capscale.R
create mode 100644 R/smbind.R
create mode 100644 build/partial.rdb
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-cran-vegan.git
More information about the debian-med-commit
mailing list