[med-svn] [gmap] 02/06: Merge tag 'upstream/2016-07-11.v4'

[Alex Mestiashvili]

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malex-guest pushed a commit to branch master
in repository gmap.

commit 0a53bf4d8782b31e91b918f3dbb7be83bb1df8e7
Merge: d85f2bd 1250ec2
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Mon Aug 8 10:41:18 2016 +0200

    Merge tag 'upstream/2016-07-11.v4'
    
    Upstream version 2016-07-11.v4

 ChangeLog                  |  34 +++++++++
 src/atoiindex.c            |  10 +--
 src/comp.h                 |   2 +-
 src/inbuffer.c             |  10 ++-
 src/pair.c                 |   2 +-
 src/pairpool.c             |   2 +-
 src/sarray-read.c          |   5 +-
 src/shortread.c            | 173 +++++++++++++++++++++++++++++++--------------
 src/stage3.c               |   5 +-
 src/stage3hr.c             |  23 ++++--
 util/gtf_genes.pl.in       |  12 ++--
 util/gtf_introns.pl.in     |  12 ++--
 util/gtf_splicesites.pl.in |   6 +-
 13 files changed, 208 insertions(+), 88 deletions(-)

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