[med-svn] [gmap] 05/06: Merge tag 'upstream/2016-08-08'
Alex Mestiashvili
malex-guest at moszumanska.debian.org
Tue Aug 9 09:08:06 UTC 2016
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malex-guest pushed a commit to branch master
in repository gmap.
commit 338f8b2724cfaf8a380a0a789636213a108503c0
Merge: 52bd7ce 84f4c61
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date: Tue Aug 9 10:48:50 2016 +0200
Merge tag 'upstream/2016-08-08'
Upstream version 2016-08-08
ChangeLog | 169 +++--
VERSION | 2 +-
configure | 24 +-
src/atoi.c | 6 +-
src/atoiindex.c | 2 +-
src/cmet.c | 6 +-
src/comp.h | 2 +-
src/doublelist.c | 2 +-
src/doublelist.h | 2 +-
src/filestring.c | 94 +--
src/genome_sites.c | 26 +-
src/gmap.c | 2 +-
src/gsnap.c | 2 +-
src/inbuffer.c | 2 +-
src/intlist.c | 2 +-
src/intlist.h | 2 +-
src/pair.c | 2 +-
src/pairpool.c | 2 +-
src/samprint.c | 54 +-
src/sarray-read.c | 2 +-
src/sedgesort.c | 2 +-
src/sedgesort.h | 2 +-
src/shortread.c | 2 +-
src/splice.c | 61 +-
src/stage1hr.c | 1752 ++++++++++++++++++++++++++++++++++++++++------------
src/stage3.c | 13 +-
src/stage3.h | 2 +-
src/stage3hr.c | 2 +-
src/stage3hr.h | 2 +-
src/substring.c | 137 ++--
src/substring.h | 10 +-
src/uintlist.c | 2 +-
src/uintlist.h | 2 +-
src/uniqscan.c | 2 +-
src/univdiag.h | 2 +-
35 files changed, 1731 insertions(+), 667 deletions(-)
--
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