[med-svn] [fast5] branch master updated (3bb6a44 -> 7c090de)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a change to branch master
in repository fast5.

      from  3bb6a44   fast5 (0~20150918-1) unstable; urgency=low
       new  9ec1ef1   Populate watch file
       new  7d9396b   Imported Upstream version 0.5.6
       new  c364668   Merge tag 'upstream/0.5.6'
       new  4230e20   Update copyright years and email address
       new  328814a   Change section to science
       new  eb4bec1   Bump Standards-Version to 3.9.8
       new  7de7fbb   Use encrypted protocols for VCS URLs
       new  779b72b   Remove obsolete autopkgtest
       new  0d060a6   Update patches
       new  c490cde   Update name of README
       new  04c709f   Remove obsolete examples
       new  7c090de   releasing package fast5 version 0.5.6-1

The 12 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .VERSION.in                         |    1 +
 .gitignore                          |    2 +
 .travis.Dockerfile.in               |   37 +
 .travis.yml                         |   19 +
 .version_files                      |    2 +
 LICENSE                             |   22 +
 README.md                           |   11 -
 README.org                          |   48 +
 VERSION                             |    1 +
 debian/changelog                    |   15 +
 debian/control                      |   11 +-
 debian/copyright                    |    7 +-
 debian/docs                         |    2 +-
 debian/examples                     |    2 -
 debian/patches/relative-paths.patch |    8 +-
 debian/patches/revise-example.patch |   31 -
 debian/patches/series               |    1 -
 debian/tests/control                |    6 -
 debian/watch                        |    5 +-
 python/.gitignore                   |    5 +
 python/Makefile                     |   35 +
 python/fast5/.version.py.in         |    1 +
 python/fast5/__init__.py            |   10 +
 python/fast5/source/fast5.cpp       |  182 ++++
 python/fast5/version.py             |    1 +
 python/setup.py                     |   94 ++
 src/.gitignore                      |    4 +
 src/Makefile                        |   35 +-
 src/a.cpp                           |   86 --
 src/f5-mod.cpp                      |   92 ++
 src/f5dump-full.cpp                 |  273 +++++
 src/f5dump.cpp                      |  197 ++++
 src/fast5.hpp                       |  928 ++++++++++++++---
 src/hdf5-mod.cpp                    |  308 ++++++
 src/hdf5_tools.hpp                  | 1894 +++++++++++++++++++++++++++--------
 src/tmp.cpp                         |  207 ++++
 36 files changed, 3877 insertions(+), 706 deletions(-)
 create mode 100644 .VERSION.in
 create mode 100644 .gitignore
 create mode 100644 .travis.Dockerfile.in
 create mode 100644 .travis.yml
 create mode 100644 .version_files
 create mode 100644 LICENSE
 delete mode 100644 README.md
 create mode 100644 README.org
 create mode 100644 VERSION
 delete mode 100644 debian/examples
 delete mode 100644 debian/patches/revise-example.patch
 delete mode 100644 debian/tests/control
 create mode 100644 python/.gitignore
 create mode 100755 python/Makefile
 create mode 100644 python/fast5/.version.py.in
 create mode 100755 python/fast5/__init__.py
 create mode 100644 python/fast5/source/fast5.cpp
 create mode 100644 python/fast5/version.py
 create mode 100755 python/setup.py
 create mode 100644 src/.gitignore
 delete mode 100644 src/a.cpp
 create mode 100644 src/f5-mod.cpp
 create mode 100644 src/f5dump-full.cpp
 create mode 100644 src/f5dump.cpp
 create mode 100644 src/hdf5-mod.cpp
 create mode 100644 src/tmp.cpp

-- 
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