[med-svn] [fast5] 09/12: Update patches

[Afif Elghraoui]

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afif pushed a commit to branch master
in repository fast5.

commit 0d060a64fb3c9bf2dcc6d4d1449207ce000d560a
Author: Afif Elghraoui <afif at debian.org>
Date:   Thu Aug 11 19:30:49 2016 -0700

    Update patches
---
 debian/patches/relative-paths.patch |  8 ++++----
 debian/patches/revise-example.patch | 31 -------------------------------
 debian/patches/series               |  1 -
 3 files changed, 4 insertions(+), 36 deletions(-)

diff --git a/debian/patches/relative-paths.patch b/debian/patches/relative-paths.patch
index 9635c69..e990a89 100644
--- a/debian/patches/relative-paths.patch
+++ b/debian/patches/relative-paths.patch
@@ -6,12 +6,12 @@ Forwarded: not-needed
 Last-Update: 2016-01-19
 --- fast5.orig/src/fast5.hpp
 +++ fast5/src/fast5.hpp
-@@ -9,7 +9,7 @@
- #include <string>
- #include <vector>
+@@ -14,7 +14,7 @@
+ #include <set>
+ #include <map>
  
 -#include "hdf5_tools.hpp"
 +#include <fast5/hdf5_tools.hpp>
  #define MAX_K_LEN 8
  
- namespace fast5
+ namespace
diff --git a/debian/patches/revise-example.patch b/debian/patches/revise-example.patch
deleted file mode 100644
index 9b68f09..0000000
--- a/debian/patches/revise-example.patch
+++ /dev/null
@@ -1,31 +0,0 @@
-Description: Revise example as applicable for Debian.
- The main changes are to find the hdf5 libraries as they are
- installed by the Debian package.
-Author: Afif Elghraoui <afif at ghraoui.name>
-Forwarded: not-needed
-Last-Update: 2016-01-19
---- fast5.orig/src/Makefile
-+++ fast5/src/Makefile
-@@ -1,2 +1,9 @@
--a: a.cpp fast5.hpp hdf5_tools.hpp
--	g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -pedantic -Wno-unused-parameter -o $@ $^ -L /usr/local/lib -lhdf5
-+
-+a: a.cpp
-+	h5c++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -pedantic -Wno-unused-parameter -o $@ -lhdf5
-+
-+
-+clean:
-+	$(RM) a
-+
-+.PHONY: clean
---- fast5.orig/src/a.cpp
-+++ fast5/src/a.cpp
-@@ -2,7 +2,7 @@
- #include <iostream>
- #include <string>
- 
--#include "fast5.hpp"
-+#include <fast5.hpp>
- 
- using namespace std;
- 
diff --git a/debian/patches/series b/debian/patches/series
index d2834ed..1b20762 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,2 +1 @@
 relative-paths.patch
-revise-example.patch

-- 
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