[med-svn] [fast5] branch upstream updated (4cdda2a -> 7d9396b)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a change to branch upstream
in repository fast5.

      from  4cdda2a   Imported Upstream version 0~20150918
       new  7d9396b   Imported Upstream version 0.5.6

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .VERSION.in                   |    1 +
 .gitignore                    |    2 +
 .travis.Dockerfile.in         |   37 +
 .travis.yml                   |   19 +
 .version_files                |    2 +
 LICENSE                       |   22 +
 README.md                     |   11 -
 README.org                    |   48 ++
 VERSION                       |    1 +
 python/.gitignore             |    5 +
 python/Makefile               |   35 +
 python/fast5/.version.py.in   |    1 +
 python/fast5/__init__.py      |   10 +
 python/fast5/source/fast5.cpp |  182 ++++
 python/fast5/version.py       |    1 +
 python/setup.py               |   94 ++
 src/.gitignore                |    4 +
 src/Makefile                  |   35 +-
 src/a.cpp                     |   86 --
 src/f5-mod.cpp                |   92 ++
 src/f5dump-full.cpp           |  273 ++++++
 src/f5dump.cpp                |  197 +++++
 src/fast5.hpp                 |  928 ++++++++++++++++----
 src/hdf5-mod.cpp              |  308 +++++++
 src/hdf5_tools.hpp            | 1894 ++++++++++++++++++++++++++++++++---------
 src/tmp.cpp                   |  207 +++++
 26 files changed, 3847 insertions(+), 648 deletions(-)
 create mode 100644 .VERSION.in
 create mode 100644 .gitignore
 create mode 100644 .travis.Dockerfile.in
 create mode 100644 .travis.yml
 create mode 100644 .version_files
 create mode 100644 LICENSE
 delete mode 100644 README.md
 create mode 100644 README.org
 create mode 100644 VERSION
 create mode 100644 python/.gitignore
 create mode 100755 python/Makefile
 create mode 100644 python/fast5/.version.py.in
 create mode 100755 python/fast5/__init__.py
 create mode 100644 python/fast5/source/fast5.cpp
 create mode 100644 python/fast5/version.py
 create mode 100755 python/setup.py
 create mode 100644 src/.gitignore
 delete mode 100644 src/a.cpp
 create mode 100644 src/f5-mod.cpp
 create mode 100644 src/f5dump-full.cpp
 create mode 100644 src/f5dump.cpp
 create mode 100644 src/hdf5-mod.cpp
 create mode 100644 src/tmp.cpp

-- 
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