[med-svn] r22676 - trunk/packages/hhsuite/trunk/debian/patches

[Andreas Tille]

Author: tille
Date: 2016-08-13 05:56:00 +0000 (Sat, 13 Aug 2016)
New Revision: 22676

Modified:
   trunk/packages/hhsuite/trunk/debian/patches/add_Makefile_in_data.patch
   trunk/packages/hhsuite/trunk/debian/patches/spelling.patch
Log:
More spelling issues, DEP3


Modified: trunk/packages/hhsuite/trunk/debian/patches/add_Makefile_in_data.patch
===================================================================
--- trunk/packages/hhsuite/trunk/debian/patches/add_Makefile_in_data.patch	2016-08-13 05:48:31 UTC (rev 22675)
+++ trunk/packages/hhsuite/trunk/debian/patches/add_Makefile_in_data.patch	2016-08-13 05:56:00 UTC (rev 22676)
@@ -1,3 +1,6 @@
+Author: Laszlo Kajan <lkajan at rostlab.org>
+Description: Add makefile to data
+
 --- /dev/null
 +++ b/data/Makefile
 @@ -0,0 +1,11 @@

Modified: trunk/packages/hhsuite/trunk/debian/patches/spelling.patch
===================================================================
--- trunk/packages/hhsuite/trunk/debian/patches/spelling.patch	2016-08-13 05:48:31 UTC (rev 22675)
+++ trunk/packages/hhsuite/trunk/debian/patches/spelling.patch	2016-08-13 05:56:00 UTC (rev 22676)
@@ -13,6 +13,15 @@
    printf(" -atab   <file> write all alignments in tabular layout to file                   \n");
    printf(" -maxres <int>  max number of HMM columns (def=%5i)             \n",par.maxres);
    printf(" -maxmem [1,inf[ max available memory in GB (def=%.1f)          \n",par.maxmem);
+@@ -1873,7 +1873,7 @@ int main(int argc, char **argv)
+ #ifdef PTHREAD
+   pthread_attr_init(&joinable);  // initialize attribute set with default values
+   if (pthread_attr_setdetachstate(&joinable, PTHREAD_CREATE_JOINABLE)!=0) // set attribute 'joinable'
+-    cerr<<"Error "<<pthread_attr_setdetachstate(&joinable, PTHREAD_CREATE_JOINABLE)<<": could not set detach state for thread attibute.\n";
++    cerr<<"Error "<<pthread_attr_setdetachstate(&joinable, PTHREAD_CREATE_JOINABLE)<<": could not set detach state for thread attribute.\n";
+ #endif
+ 
+   par.premerge = 3;
 --- a/src/hhsearch.C
 +++ b/src/hhsearch.C
 @@ -325,7 +325,7 @@ void help(char all=0)
@@ -24,6 +33,15 @@
    printf(" -calm {0,..,3} empirical score calibration of 0:query 1:template 2:both   \n");
    printf("                default 3: neural network-based estimation of EVD params   \n");
    // printf(" -opt  <file>   parameter optimization mode (def=off): return sum of ranks \n");
+@@ -1122,7 +1122,7 @@ int main(int argc, char **argv)
+ #ifdef PTHREAD
+   pthread_attr_init(&joinable);  // initialize attribute set with default values
+   if (pthread_attr_setdetachstate(&joinable, PTHREAD_CREATE_JOINABLE)!=0) // set attribute 'joinable'
+-    cerr<<"Error "<<pthread_attr_setdetachstate(&joinable, PTHREAD_CREATE_JOINABLE)<<": could not set detach state for thread attibute.\n";
++    cerr<<"Error "<<pthread_attr_setdetachstate(&joinable, PTHREAD_CREATE_JOINABLE)<<": could not set detach state for thread attribute.\n";
+ #endif
+ 
+   // Make command line input globally available
 --- a/src/hhsuite-userguide.tex
 +++ b/src/hhsuite-userguide.tex
 @@ -1542,7 +1542,7 @@ Other options: