[med-svn] [cd-hit] 01/01: Autopkgtest fixed

[Canberk Koç]

This is an automated email from the git hooks/post-receive script.

cbk-guest pushed a commit to branch master
in repository cd-hit.

commit e46e762d0e80bdfb45fe624f2ce622058bf23451
Author: cbk-guest <cbk-guests at scm.alioth.debian.org>
Date:   Sun Aug 14 14:50:13 2016 +0300

    Autopkgtest fixed
---
 debian/changelog           |  7 +++++++
 debian/tests/run-unit-test | 20 +++++++++++++++-----
 2 files changed, 22 insertions(+), 5 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 831c850..ff0b0e3 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,10 @@
+cd-hit (4.6.6-3) UNRELEASED; urgency=medium
+
+  * Team upload.
+  * Autopkgtest fixed
+
+ -- Canberk Koç <canberkkoc at gmail.com>  Sun, 14 Aug 2016 14:49:02 +0300
+
 cd-hit (4.6.6-2) unstable; urgency=medium
 
   * Team upload
diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test
index 9744bb0..b5d62e3 100644
--- a/debian/tests/run-unit-test
+++ b/debian/tests/run-unit-test
@@ -13,11 +13,21 @@ cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP
 cd $AUTOPKGTEST_TMP
 find . -name "*.gz" -exec gunzip \{\} \;
 
-echo "==== CD_HIT-PARA ===="
-cd-hit-para -i example.fa -o db90 -c 0.9 -n 5 -M 16000 –d 0 -T 0
-echo "==== CD_HIT-2D-PARA ===="
-cd-hit-2d-para -i example.fa -i2 example.fa -o db2novel -c 0.9 -n 5 -d 0 -M 16000 -T 0
-echo "==== cd-hit-div ===="
+echo "==== CD_HIT ===="
+cd-hit -i example.fa -o out -c 1.00 -n 5 -M 1000 -T 0
+echo "==== CD_HIT-2D ===="
+cd-hit-2d -i example.fa -i2 example.fa -o out -c 0.9 -n 5 -M 1000 -T 0
+echo "==== CD_HIT-EST ===="
+cd-hit-est -i example.fa -o out -c 0.95 -n 10 -M 1000 -T 0
+echo "==== CD_HIT-EST-2D ===="
+cd-hit-est-2d -i example.fa -i2 example.fa -o out -c 0.95 -n 10 -M 1000 -T 0
+echo "==== CD_HIT-454 ===="
+cd-hit-454 -i example.fa -o out -c 0.95 -n 10 -M 1000 -T 0
+echo "==== CD_HIT-DIV ===="
 cd-hit-div example.fa output 4
+for i in `ls ./*output*` ; do
+	echo $i
+	cat $i
+done
 
 echo "PASS"

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/cd-hit.git