[med-svn] [sspace] 01/02: add build-time tests
Sascha Steinbiss
satta at debian.org
Mon Aug 15 14:22:22 UTC 2016
This is an automated email from the git hooks/post-receive script.
satta pushed a commit to branch master
in repository sspace.
commit 1922e1a630d5be802a62a489067b9c40607267af
Author: Sascha Steinbiss <satta at debian.org>
Date: Mon Aug 15 14:16:10 2016 +0000
add build-time tests
---
debian/control | 3 ++-
debian/rules | 2 ++
debian/tests/example-tests | 8 +++++++-
3 files changed, 11 insertions(+), 2 deletions(-)
diff --git a/debian/control b/debian/control
index 6eb158a..2181a69 100644
--- a/debian/control
+++ b/debian/control
@@ -7,7 +7,8 @@ Priority: optional
Build-Depends: debhelper (>= 9),
recode,
python,
- asciidoctor
+ asciidoctor,
+ bowtie
Standards-Version: 3.9.8
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/sspace.git
Vcs-Git: https://anonscm.debian.org/git/debian-med/sspace.git
diff --git a/debian/rules b/debian/rules
index 424f9aa..176f41d 100755
--- a/debian/rules
+++ b/debian/rules
@@ -15,6 +15,8 @@ override_dh_install:
chmod -x debian/sspace/usr/share/sspace/tools/TRIMMING_PAIRED_READS.README \
debian/sspace/usr/share/sspace/tools/TQS.readme \
debian/sspace/usr/share/sspace/dotlib/DotLib.pm
+override_dh_auto_test:
+ debian/tests/example-tests $(PWD)/SSPACE_Basic.pl
override_dh_installexamples:
dh_installexamples
diff --git a/debian/tests/example-tests b/debian/tests/example-tests
index b1a35a8..2c112f6 100755
--- a/debian/tests/example-tests
+++ b/debian/tests/example-tests
@@ -11,7 +11,13 @@ cd $WORKDIR
cp $ORIGDIR/example/* .
cp $ORIGDIR/debian/tests/SRR* .
-sspace -l libraries.txt -s contigs_abyss.fasta
+if [ -n "$1" ]; then
+ CMD=$1;
+else
+ CMD=sspace
+fi
+
+$CMD -l libraries.txt -s contigs_abyss.fasta
[ -s standard_output.final.evidence ]
[ -s standard_output.final.scaffolds.fasta ]
--
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