[med-svn] [iqtree] branch master updated (4709d4d -> 2190669)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository iqtree.

      from  4709d4d   Upload to unstable
       new  d67f0c4   Imported Upstream version 1.4.3+dfsg
       new  45ea220   Merge tag 'upstream/1.4.3+dfsg'
       new  9fc96d9   New upstream version
       new  2190669   Upload to unstable

The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 CMakeLists.txt                |    2 +-
 alignment.cpp                 |   88 ++-
 alignment.h                   |   14 +-
 checkpoint.cpp                |    4 +-
 debian/changelog              |    6 +
 debian/patches/spelling.patch |   17 +-
 iqtree.cpp                    |   45 +-
 model/modelcodon.cpp          |   75 +++
 model/modelcodon.h            |   10 +
 model/modeldna.cpp            |   10 +-
 model/modelfactory.cpp        |  414 +++++++-------
 model/modelfactory.h          |    8 +-
 model/modelgtr.cpp            |    8 +-
 model/modelgtr.h              |    2 +-
 model/modelmixture.cpp        |    2 +-
 model/modelnonrev.cpp         |    6 +-
 model/ratefree.cpp            |   28 +-
 model/ratefreeinvar.cpp       |    1 +
 model/ratefreeinvar.h         |    2 +-
 model/rategamma.cpp           |   29 +-
 model/rategammainvar.cpp      |  239 ++++++---
 model/rategammainvar.h        |   53 +-
 model/rateheterogeneity.cpp   |   18 +-
 model/rateheterogeneity.h     |   13 +
 ncl/nxscharactersblock.cpp    |    9 +-
 ngs.cpp                       |    4 +-
 ngs.h                         |    2 +-
 pda.cpp                       |    2 -
 phyloanalysis.cpp             |   53 +-
 phylokernel.h                 |   10 +-
 phylokernelmixrate.h          |    6 +
 phylokernelmixture.h          |    6 +
 phylosupertreeplen.cpp        |    6 +-
 phylotesting.cpp              |   69 ++-
 phylotree.cpp                 | 1162 ++--------------------------------------
 phylotree.h                   |  152 +-----
 phylotreesse.cpp              | 1185 +++++++++++++++--------------------------
 quartet.cpp                   |    4 +
 tools.cpp                     |  122 +++--
 tools.h                       |   33 +-
 40 files changed, 1434 insertions(+), 2485 deletions(-)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/iqtree.git