[med-svn] [iqtree] 03/04: New upstream version

[Andreas Tille]

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tille pushed a commit to branch master
in repository iqtree.

commit 9fc96d9b4d860ea4b36922ff4e22d2670142555b
Author: Andreas Tille <tille at debian.org>
Date:   Mon Aug 15 22:24:45 2016 +0200

    New upstream version
---
 debian/changelog              |  6 ++++++
 debian/patches/spelling.patch | 17 +++--------------
 2 files changed, 9 insertions(+), 14 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index e05c55f..d97c823 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+iqtree (1.4.3+dfsg-1) UNRELEASED; urgency=medium
+
+  * New upstream version
+
+ -- Andreas Tille <tille at debian.org>  Mon, 15 Aug 2016 22:24:28 +0200
+
 iqtree (1.4.2+dfsg-1) unstable; urgency=medium
 
   [ Andreas Tille ]
diff --git a/debian/patches/spelling.patch b/debian/patches/spelling.patch
index 274b3b0..9b942b6 100644
--- a/debian/patches/spelling.patch
+++ b/debian/patches/spelling.patch
@@ -29,20 +29,9 @@ Description: Fix spelling
  	}
  }
  
---- a/model/modelfactory.cpp
-+++ b/model/modelfactory.cpp
-@@ -872,7 +872,7 @@ double ModelFactory::optimizeParametersG
-     if (write_info)
-         cout << "testInterval: " << testInterval << endl;
- 
--	// Now perform testing different inital p_inv values
-+	// Now perform testing different initial p_inv values
- 	while (initPInv <= frac_const) {
-         if (write_info) {
-             cout << endl;
 --- a/tools.h
 +++ b/tools.h
-@@ -1854,7 +1854,7 @@ const char ERR_WRITE_OUTPUT[] = "Cannot
+@@ -1863,7 +1863,7 @@ const char ERR_WRITE_OUTPUT[] = "Cannot
  const char ERR_NO_K[] = "You must specify the number of taxa in the PD set.";
  const char ERR_TOO_SMALL_K[] = "Size of PD-set must be at least the size of initial set.";
  const char ERR_NO_BUDGET[] = "Total budget is not specified or less than zero.";
@@ -64,7 +53,7 @@ Description: Fix spelling
  
 --- a/phyloanalysis.cpp
 +++ b/phyloanalysis.cpp
-@@ -457,7 +457,7 @@ void reportTree(ofstream &out, Params &p
+@@ -455,7 +455,7 @@ void reportTree(ofstream &out, Params &p
              }
      }
      if (is_codon)
@@ -73,7 +62,7 @@ Description: Fix spelling
              << endl << "      Rescale them by 1/3 if you want to have #nt substitutions per nt site" << endl;
      if (main_tree) 
      if (params.aLRT_replicates > 0 || params.gbo_replicates || (params.num_bootstrap_samples && params.compute_ml_tree)) {
-@@ -550,7 +550,7 @@ void reportPhyloAnalysis(Params &params,
+@@ -548,7 +548,7 @@ void reportPhyloAnalysis(Params &params,
  		}
  		for (IntVector::iterator i2 = counts.begin(); i2 != counts.end(); i2++) {
  		    if (*i2 != 0) {

-- 
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