[med-svn] [ngs-sdk] branch master updated (13e12c1 -> 5fdf713)

[Olivier Sallou]

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osallou pushed a change to branch master
in repository ngs-sdk.

      from  13e12c1   Add a maven2 pom file for libngs-java
       new  62d125b   Imported Upstream version 1.2.5
       new  05f127b   Merge tag 'upstream/1.2.5'
       new  5fdf713   new upstream release 1.2.5

The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
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Summary of changes:
 CHANGES                                            |  15 ++
 CHANGES.md                                         |  37 ++--
 debian/changelog                                   |   6 +
 ..._exclude_certain_architectures_explicitly.patch |   8 +-
 ngs-bam/.gitignore                                 |   1 +
 ngs-bam/Makefile                                   |   2 +-
 {ngs-sdk => ngs-bam}/Makefile.install              |  25 +--
 ngs-sdk/language/Makefile => ngs-bam/Makefile.vers |  29 +--
 ngs-bam/setup/konfigure.perl                       | 206 +++++++++++++--------
 ngs-bam/setup/package.prl                          |   1 -
 .../language/Makefile => ngs-java/Makefile.vers    |  29 +--
 ngs-java/gov/nih/nlm/ncbi/ngs/LibDependencies.java |   4 +-
 ngs-java/setup/konfigure.perl                      | 204 ++++++++++++--------
 ngs-java/setup/package.prl                         |   1 -
 ngs-python/.gitignore                              |   1 +
 .../language/Makefile => ngs-python/Makefile.vers  |  29 +--
 ngs-python/setup/konfigure.perl                    | 204 ++++++++++++--------
 ngs-python/setup/package.prl                       |   1 -
 ngs-sdk/.gitignore                                 |   1 +
 ngs-sdk/Makefile                                   |   2 +-
 ngs-sdk/{language/Makefile => Makefile.vers}       |  29 +--
 ngs-sdk/dispatch/version.h                         |   2 +-
 ngs-sdk/language/java/jni_String.cpp               |  10 +-
 ngs-sdk/setup/konfigure.perl                       | 203 ++++++++++++--------
 ngs-sdk/setup/package.prl                          |   1 -
 25 files changed, 581 insertions(+), 470 deletions(-)
 copy {ngs-sdk => ngs-bam}/Makefile.install (86%)
 copy ngs-sdk/language/Makefile => ngs-bam/Makefile.vers (78%)
 copy ngs-sdk/language/Makefile => ngs-java/Makefile.vers (78%)
 copy ngs-sdk/language/Makefile => ngs-python/Makefile.vers (78%)
 copy ngs-sdk/{language/Makefile => Makefile.vers} (78%)

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