[med-svn] [sga] branch debian/unstable updated (9106e2d -> 73da6d0)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a change to branch debian/unstable
in repository sga.

      from  9106e2d   releasing package sga version 0.10.14-3
       new  77a121a   Imported Upstream version 0.10.15
       new  664606c   Merge tag 'upstream/0.10.15' into debian/unstable
       new  47f18d8   Refresh patches
       new  73da6d0   Drop backported GCC6 compatibility patch

The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 Dockerfile                                         | 74 ++++++++++++++++++++++
 Dockerfile.testing                                 | 63 ++++++++++++++++++
 debian/patches/0002-no-rpath.patch                 |  8 +--
 debian/patches/0003-do-not-dist-unsup-script.patch |  4 +-
 .../patches/0004-Add-help-to-sga-bam2de.pl.patch   | 10 +--
 ...0005-Remove-extensions-on-scripts-we-ship.patch |  4 +-
 debian/patches/0006-remove-google-addsense.patch   |  6 +-
 debian/patches/0007-gcc-6.patch                    | 50 ---------------
 debian/patches/series                              |  1 -
 src/Bigraph/Bigraph.cpp                            |  2 +-
 src/Bigraph/Vertex.h                               |  3 +-
 src/SGA/kmer-count.cpp                             |  2 +-
 src/SGA/overlap-long.cpp                           |  5 +-
 src/SGA/preqc.cpp                                  |  2 +-
 src/SuffixTools/STCommon.h                         |  2 +-
 src/bin/sga-bam2de.pl                              |  2 +-
 src/bin/sga-preqc-report.py                        |  2 +-
 src/configure.ac                                   |  6 +-
 src/examples/sga-ecoli-miseq.sh                    |  3 +-
 19 files changed, 168 insertions(+), 81 deletions(-)
 create mode 100644 Dockerfile
 create mode 100644 Dockerfile.testing
 delete mode 100644 debian/patches/0007-gcc-6.patch

-- 
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