[med-svn] [ariba] branch upstream updated (548ed16 -> f67c28c)

[Sascha Steinbiss]

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satta pushed a change to branch upstream
in repository ariba.

      from  548ed16   Imported Upstream version 2.2.1+ds
       new  f67c28c   Imported Upstream version 2.2.2+ds

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 ariba/cdhit.py                                     | 24 ++++++++++---
 ariba/reference_data.py                            | 15 +++++----
 ariba/tests/cdhit_test.py                          | 39 ++++++++++++++++++++--
 ...t_test_run_get_clusters_from_dict_rename.in.fa} |  2 +-
 ariba/tests/reference_data_test.py                 | 34 ++++++++++++++++++-
 setup.py                                           |  2 +-
 6 files changed, 99 insertions(+), 17 deletions(-)
 copy ariba/tests/data/{cdhit_test_run_get_clusters_from_dict.in.fa => cdhit_test_run_get_clusters_from_dict_rename.in.fa} (65%)

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