[med-svn] [ariba] 01/03: Imported Upstream version 2.2.3+ds

[Sascha Steinbiss]

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satta pushed a commit to branch master
in repository ariba.

commit 551da84eab420f7d8f00d7911734989a96dcf118
Author: Sascha Steinbiss <satta at debian.org>
Date:   Tue Aug 23 12:00:16 2016 +0000

    Imported Upstream version 2.2.3+ds
---
 ariba/summary_cluster_variant.py | 2 +-
 setup.py                         | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/ariba/summary_cluster_variant.py b/ariba/summary_cluster_variant.py
index 51e00d9..fa9a867 100644
--- a/ariba/summary_cluster_variant.py
+++ b/ariba/summary_cluster_variant.py
@@ -33,7 +33,7 @@ class SummaryClusterVariant:
 
     @classmethod
     def _get_het_percent(cls, data_dict):
-        if data_dict['gene'] == '1' or data_dict['ref_ctg_effect'] != 'SNP' or data_dict['smtls_alt_nt'] == '.' or ';' in data_dict['smtls_alt_nt']:
+        if data_dict['gene'] == '1' or data_dict['ref_ctg_effect'] != 'SNP' or data_dict['smtls_alt_nt'] == '.' or ';' in data_dict['smtls_alt_nt'] or data_dict['smtls_alt_depth'] == 'ND':
             return None
         else:
             nucleotides = [data_dict['ctg_nt']] + data_dict['smtls_alt_nt'].split(',')
diff --git a/setup.py b/setup.py
index 5a7e806..4e8a837 100644
--- a/setup.py
+++ b/setup.py
@@ -51,7 +51,7 @@ fermilite_mod = Extension(
 setup(
     ext_modules=[minimap_mod, fermilite_mod],
     name='ariba',
-    version='2.2.2',
+    version='2.2.3',
     description='ARIBA: Antibiotic Resistance Identification By Assembly',
     packages = find_packages(),
     package_data={'ariba': ['test_run_data/*']},

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