[med-svn] [gwama] 02/04: Refresh patch

[Dylan Aïssi]

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bob.dybian-guest pushed a commit to branch master
in repository gwama.

commit d795949d27c88f31440ecf6a940bd09c3aebc092
Author: Dylan Aïssi <bob.dybian at gmail.com>
Date:   Fri Aug 26 07:44:38 2016 +0200

    Refresh patch
---
 debian/patches/03.Fix_lintian_spelling-error-in-binary.patch | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/debian/patches/03.Fix_lintian_spelling-error-in-binary.patch b/debian/patches/03.Fix_lintian_spelling-error-in-binary.patch
index ac4e348..c607c8f 100644
--- a/debian/patches/03.Fix_lintian_spelling-error-in-binary.patch
+++ b/debian/patches/03.Fix_lintian_spelling-error-in-binary.patch
@@ -5,12 +5,12 @@ Last-Update: 2016-06-21
 
 --- a/readFile.cpp
 +++ b/readFile.cpp
-@@ -579,7 +579,7 @@
- 		}
- 		cout << "Marker count: " << _markerProblems.markersAll << " Markers passing sanity check: " << _markerProblems.markersOK << endl;
+@@ -1099,7 +1099,7 @@
+     }
+ 		cout << "Marker count: " << _markerProblems.markersAll << " Markers passing sanity check (and filters): " << _markerProblems.markersOK << endl;
  		cout << "Strand problems: " << _markerProblems.problemStrand << " Wrong alleles: " << _markerProblems.wrongAlleles << endl;
 -		cout << "Effect problems: " << _markerProblems.problemEffect << " Multiple occurances: " << _markerProblems.problemMulti << endl;
 +		cout << "Effect problems: " << _markerProblems.problemEffect << " Multiple occurrences: " << _markerProblems.problemMulti << endl;
- 		return true;
- }
- 
+         for (int j=0; j<_filterColumnNr.size();j++)
+         {   
+             if (_filterColumnNr[j] != -1)

-- 
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