[med-svn] [subread] 02/05: Merge tag 'upstream/1.5.1+dfsg'
Alex Mestiashvili
malex-guest at moszumanska.debian.org
Sun Aug 28 07:09:04 UTC 2016
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malex-guest pushed a commit to branch master
in repository subread.
commit 5fe196a4b4ee1291cf4c6fa1b12c4e95d8f5f50c
Merge: 38d1d19 e3249b5
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date: Sun Aug 28 08:31:49 2016 +0200
Merge tag 'upstream/1.5.1+dfsg'
Upstream version 1.5.1+dfsg
annotation/hg38_RefSeq_exon.txt | 261753 +++++++++++++++++++++++
doc/SubreadUsersGuide.tex | 143 +-
src/Makefile | 2 +-
src/Makefile.FreeBSD | 2 +-
src/Makefile.Linux | 2 +-
src/Makefile.MacOS | 2 +-
src/SNPCalling.c | 8 +-
src/core-indel.c | 38 +-
src/core-interface-aligner.c | 5 +
src/core-interface-subjunc.c | 6 +
src/core-junction.c | 2 +-
src/core.c | 86 +-
src/core.h | 5 +-
src/gene-value-index.c | 5 +-
src/input-files.c | 54 +-
src/input-files.h | 2 +
src/interval_merge.c | 24 +-
src/makefile.version | 2 +-
src/readSummary.c | 1166 +-
test/featureCounts/data/corner-MinOverlap.ora | 8 +-
test/featureCounts/data/corner-fractions.SAF | 5 +
test/featureCounts/data/corner-fractions.ora | 3 +
test/featureCounts/data/corner-fractions.sam | 7 +
test/featureCounts/data/test-fracOverlap.ora | 4 +
test/featureCounts/data/test-fracOverlap.sam | 4 +
test/featureCounts/test_corner_cases.sh | 8 +-
26 files changed, 262873 insertions(+), 473 deletions(-)
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