[med-svn] [ariba] 04/06: refresh patches

[Sascha Steinbiss]

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satta pushed a commit to branch master
in repository ariba.

commit e161880c1f5fc954dedff3f0bbcef1b223663e7a
Author: Sascha Steinbiss <satta at debian.org>
Date:   Wed Aug 31 13:53:29 2016 +0000

    refresh patches
---
 debian/patches/rename-cdhit.patch                           | 4 ++--
 debian/patches/use_debian_packaged_libs_for_extension.patch | 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/debian/patches/rename-cdhit.patch b/debian/patches/rename-cdhit.patch
index dc9f13a..038c320 100644
--- a/debian/patches/rename-cdhit.patch
+++ b/debian/patches/rename-cdhit.patch
@@ -3,9 +3,9 @@ Description: use Debian name for CD-HIT
 Author: Sascha Steinbiss <satta at debian.org>
 --- a/ariba/external_progs.py
 +++ b/ariba/external_progs.py
-@@ -12,8 +12,8 @@
+@@ -11,8 +11,8 @@
+ 
  prog_to_default = {
-     'bcftools': 'bcftools',
      'bowtie2': 'bowtie2',
 -    'cdhit': 'cd-hit-est',
 -    'cdhit2d': 'cd-hit-est-2d',
diff --git a/debian/patches/use_debian_packaged_libs_for_extension.patch b/debian/patches/use_debian_packaged_libs_for_extension.patch
index b0f002b..4577814 100644
--- a/debian/patches/use_debian_packaged_libs_for_extension.patch
+++ b/debian/patches/use_debian_packaged_libs_for_extension.patch
@@ -81,4 +81,4 @@ Author: Sascha Steinbiss <satta at debian.org>
 +    #include_dirs=[os.path.join('third_party', 'fermi-lite-0.1')],
  )
  
- 
+ vcfcall_mod = Extension(

-- 
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