[med-svn] [python-pyvcf] branch master updated (482dccb -> 5a22064)

[Andreas Tille]

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tille pushed a change to branch master
in repository python-pyvcf.

      from  482dccb   Upload to unstable
       new  d95234c   Fix watch file
       new  9c5c275   Fix obtaining version in get-orig-source
       new  de030e8   New upstream version 0.6.8
       new  e5b6d3a   Merge tag 'upstream/0.6.8'
       new  8bcbef7   New upstream version
       new  a33cd39   cme fix dpkg-control
       new  31ef761   debhelper 10
       new  4e98162   Patch applied upstream
       new  3d2ee24   hardening=+all
       new  1cacc9d   Remove unused lintian override
       new  5a22064   Rename all *.py files and upload

The 11 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 PKG-INFO                                       | 187 +-------
 README.rst                                     |  33 +-
 debian/changelog                               |  11 +
 debian/compat                                  |   2 +-
 debian/control                                 |   8 +-
 debian/get-orig-source                         |   3 +-
 debian/patches/series                          |   1 -
 debian/patches/use_setuptools.patch            |  16 -
 debian/python-pyvcf-examples.lintian-overrides |   3 -
 debian/rules                                   |   6 +-
 debian/watch                                   |   5 +-
 scripts/vcf_sample_filter.py                   |  39 ++
 setup.cfg                                      |   2 +-
 setup.py                                       |  40 +-
 vcf/__init__.py                                | 175 +------
 vcf/cparse.pyx                                 |   5 +-
 vcf/model.py                                   | 146 ++++--
 vcf/parser.py                                  | 193 ++++----
 vcf/sample_filter.py                           | 115 +++++
 vcf/test/FT.vcf                                |  50 ++
 vcf/test/issue-214.vcf                         |  32 ++
 vcf/test/strelka.vcf                           |  57 +++
 vcf/test/test_vcf.py                           | 613 +++++++++++++++++++++++--
 vcf/utils.py                                   |   2 +-
 24 files changed, 1192 insertions(+), 552 deletions(-)
 delete mode 100644 debian/patches/series
 delete mode 100644 debian/patches/use_setuptools.patch
 delete mode 100644 debian/python-pyvcf-examples.lintian-overrides
 create mode 100644 scripts/vcf_sample_filter.py
 create mode 100644 vcf/sample_filter.py
 create mode 100644 vcf/test/FT.vcf
 create mode 100644 vcf/test/issue-214.vcf
 create mode 100644 vcf/test/strelka.vcf

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