[med-svn] [qtltools] 02/02: Add README.source about d/upstream.example/* files
Dylan Aïssi
bob.dybian-guest at moszumanska.debian.org
Fri Dec 2 22:41:34 UTC 2016
This is an automated email from the git hooks/post-receive script.
bob.dybian-guest pushed a commit to branch master
in repository qtltools.
commit 644a43a2d871defdd9d8eebec8940442304d810e
Author: Dylan Aïssi <bob.dybian at gmail.com>
Date: Fri Dec 2 23:38:20 2016 +0100
Add README.source about d/upstream.example/* files
---
debian/{upstream.docs/README => README.source} | 54 ++++++++++++---------
debian/changelog | 2 +-
debian/qtltools-example.install | 2 +-
debian/rules | 2 +-
debian/source/include-binaries | 14 +++---
.../genes.50percent.chr22.bed.gz | Bin
.../genes.50percent.chr22.bed.gz.tbi | Bin
.../genes.covariates.pc50.txt.gz | Bin
.../genes.simulated.chr22.bed.gz | Bin
.../genes.simulated.chr22.bed.gz.tbi | Bin
.../genotypes.chr22.vcf.gz | Bin
.../genotypes.chr22.vcf.gz.tbi | Bin
12 files changed, 40 insertions(+), 34 deletions(-)
diff --git a/debian/upstream.docs/README b/debian/README.source
similarity index 74%
rename from debian/upstream.docs/README
rename to debian/README.source
index ef76ae3..ff4cf4c 100644
--- a/debian/upstream.docs/README
+++ b/debian/README.source
@@ -1,24 +1,30 @@
-# Author: Dylan Aïssi <bob.dybian at gmail.com>
-# Last-Update: 2016-11-16
-# These files were downloaded from http://jungle.unige.ch/QTLtools_examples/
-
-# Needed for autopkgtest
- wget http://jungle.unige.ch/QTLtools_examples/genes.50percent.chr22.bed.gz
- wget http://jungle.unige.ch/QTLtools_examples/genes.50percent.chr22.bed.gz.tbi
- wget http://jungle.unige.ch/QTLtools_examples/genotypes.chr22.vcf.gz
- wget http://jungle.unige.ch/QTLtools_examples/genotypes.chr22.vcf.gz.tbi
- wget http://jungle.unige.ch/QTLtools_examples/genes.covariates.pc50.txt.gz
- wget http://jungle.unige.ch/QTLtools_examples/genes.simulated.chr22.bed.gz
- wget http://jungle.unige.ch/QTLtools_examples/genes.simulated.chr22.bed.gz.tbi
-
-## Not needed for autopkgtest
-# wget http://jungle.unige.ch/QTLtools_examples/GWAS.b37.txt
-# wget http://jungle.unige.ch/QTLtools_examples/HG00381.chr22.bam # ~ 45Mo
-# wget http://jungle.unige.ch/QTLtools_examples/HG00381.chr22.bam.bai
-# wget http://jungle.unige.ch/QTLtools_examples/TFs.encode.bed.gz
-# wget http://jungle.unige.ch/QTLtools_examples/exons.50percent.chr22.bed.gz # ~ 7Mo
-# wget http://jungle.unige.ch/QTLtools_examples/exons.50percent.chr22.bed.gz.tbi
-# wget http://jungle.unige.ch/QTLtools_examples/gencode.v19.annotation.chr22.gtf.gz
-# wget http://jungle.unige.ch/QTLtools_examples/gencode.v19.exon.chr22.bed.gz
-# wget http://jungle.unige.ch/QTLtools_examples/hotspots_b37_hg19.bed
-# wget http://jungle.unige.ch/QTLtools_examples/results.genes.full.txt.gz
+QTLtools - example data files
+=============================================
+
+Upstream provide some example data files at http://jungle.unige.ch/QTLtools_examples/
+These files are not included in the upstream source package.
+Some of these example data files (smaller ones) are manually downloaded and put into the
+ debian/upstream.example folder in order to be able to run autopkgtest.
+
+# Needed for autopkgtest
+ wget http://jungle.unige.ch/QTLtools_examples/genes.50percent.chr22.bed.gz
+ wget http://jungle.unige.ch/QTLtools_examples/genes.50percent.chr22.bed.gz.tbi
+ wget http://jungle.unige.ch/QTLtools_examples/genotypes.chr22.vcf.gz
+ wget http://jungle.unige.ch/QTLtools_examples/genotypes.chr22.vcf.gz.tbi
+ wget http://jungle.unige.ch/QTLtools_examples/genes.covariates.pc50.txt.gz
+ wget http://jungle.unige.ch/QTLtools_examples/genes.simulated.chr22.bed.gz
+ wget http://jungle.unige.ch/QTLtools_examples/genes.simulated.chr22.bed.gz.tbi
+
+## Not needed for autopkgtest
+# wget http://jungle.unige.ch/QTLtools_examples/GWAS.b37.txt
+# wget http://jungle.unige.ch/QTLtools_examples/HG00381.chr22.bam # ~ 45Mo
+# wget http://jungle.unige.ch/QTLtools_examples/HG00381.chr22.bam.bai
+# wget http://jungle.unige.ch/QTLtools_examples/TFs.encode.bed.gz
+# wget http://jungle.unige.ch/QTLtools_examples/exons.50percent.chr22.bed.gz # ~ 7Mo
+# wget http://jungle.unige.ch/QTLtools_examples/exons.50percent.chr22.bed.gz.tbi
+# wget http://jungle.unige.ch/QTLtools_examples/gencode.v19.annotation.chr22.gtf.gz
+# wget http://jungle.unige.ch/QTLtools_examples/gencode.v19.exon.chr22.bed.gz
+# wget http://jungle.unige.ch/QTLtools_examples/hotspots_b37_hg19.bed
+# wget http://jungle.unige.ch/QTLtools_examples/results.genes.full.txt.gz
+
+ -- Dylan Aïssi <bob.dybian at gmail.com> Fri, 02 Dec 2016 23:35:41 +0100
diff --git a/debian/changelog b/debian/changelog
index bb170fa..802e6cb 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -2,4 +2,4 @@ qtltools (1.0+dfsg-1) UNRELEASED; urgency=medium
* Initial release. (Closes: #845590)
- -- Dylan Aïssi <bob.dybian at gmail.com> Mon, 17 Oct 2016 23:22:20 +0200
+ -- Dylan Aïssi <bob.dybian at gmail.com> Fri, 02 Dec 2016 23:35:41 +0100
diff --git a/debian/qtltools-example.install b/debian/qtltools-example.install
index 014bbda..93e711f 100644
--- a/debian/qtltools-example.install
+++ b/debian/qtltools-example.install
@@ -1,3 +1,3 @@
debian/tests/run-sample-analysis /usr/share/doc/qtltools/examples/
-debian/upstream.docs/examples.tar.xz /usr/share/doc/qtltools/examples/
+debian/upstream.example/examples.tar.xz /usr/share/doc/qtltools/examples/
script/* /usr/share/doc/qtltools/examples/
diff --git a/debian/rules b/debian/rules
index e6dcb09..cc7f05e 100755
--- a/debian/rules
+++ b/debian/rules
@@ -12,6 +12,6 @@ override_dh_auto_build:
dh_auto_build
override_dh_install:
- cd debian/upstream.docs && find -type f | LC_ALL=C sort | tar -T - --sort=name --mode=go=rX,u+rw,a-s --owner=root --group=root --numeric-owner -Jcvf examples.tar.xz
+ cd debian/upstream.example && find -type f | LC_ALL=C sort | tar -T - --sort=name --mode=go=rX,u+rw,a-s --owner=root --group=root --numeric-owner -Jcvf examples.tar.xz
dh_install
diff --git a/debian/source/include-binaries b/debian/source/include-binaries
index f671e9e..7907531 100644
--- a/debian/source/include-binaries
+++ b/debian/source/include-binaries
@@ -1,7 +1,7 @@
-debian/upstream.docs/genes.50percent.chr22.bed.gz
-debian/upstream.docs/genes.50percent.chr22.bed.gz.tbi
-debian/upstream.docs/genes.covariates.pc50.txt.gz
-debian/upstream.docs/genes.simulated.chr22.bed.gz
-debian/upstream.docs/genes.simulated.chr22.bed.gz.tbi
-debian/upstream.docs/genotypes.chr22.vcf.gz
-debian/upstream.docs/genotypes.chr22.vcf.gz.tbi
+debian/upstream.example/genes.50percent.chr22.bed.gz
+debian/upstream.example/genes.50percent.chr22.bed.gz.tbi
+debian/upstream.example/genes.covariates.pc50.txt.gz
+debian/upstream.example/genes.simulated.chr22.bed.gz
+debian/upstream.example/genes.simulated.chr22.bed.gz.tbi
+debian/upstream.example/genotypes.chr22.vcf.gz
+debian/upstream.example/genotypes.chr22.vcf.gz.tbi
diff --git a/debian/upstream.docs/genes.50percent.chr22.bed.gz b/debian/upstream.example/genes.50percent.chr22.bed.gz
similarity index 100%
rename from debian/upstream.docs/genes.50percent.chr22.bed.gz
rename to debian/upstream.example/genes.50percent.chr22.bed.gz
diff --git a/debian/upstream.docs/genes.50percent.chr22.bed.gz.tbi b/debian/upstream.example/genes.50percent.chr22.bed.gz.tbi
similarity index 100%
rename from debian/upstream.docs/genes.50percent.chr22.bed.gz.tbi
rename to debian/upstream.example/genes.50percent.chr22.bed.gz.tbi
diff --git a/debian/upstream.docs/genes.covariates.pc50.txt.gz b/debian/upstream.example/genes.covariates.pc50.txt.gz
similarity index 100%
rename from debian/upstream.docs/genes.covariates.pc50.txt.gz
rename to debian/upstream.example/genes.covariates.pc50.txt.gz
diff --git a/debian/upstream.docs/genes.simulated.chr22.bed.gz b/debian/upstream.example/genes.simulated.chr22.bed.gz
similarity index 100%
rename from debian/upstream.docs/genes.simulated.chr22.bed.gz
rename to debian/upstream.example/genes.simulated.chr22.bed.gz
diff --git a/debian/upstream.docs/genes.simulated.chr22.bed.gz.tbi b/debian/upstream.example/genes.simulated.chr22.bed.gz.tbi
similarity index 100%
rename from debian/upstream.docs/genes.simulated.chr22.bed.gz.tbi
rename to debian/upstream.example/genes.simulated.chr22.bed.gz.tbi
diff --git a/debian/upstream.docs/genotypes.chr22.vcf.gz b/debian/upstream.example/genotypes.chr22.vcf.gz
similarity index 100%
rename from debian/upstream.docs/genotypes.chr22.vcf.gz
rename to debian/upstream.example/genotypes.chr22.vcf.gz
diff --git a/debian/upstream.docs/genotypes.chr22.vcf.gz.tbi b/debian/upstream.example/genotypes.chr22.vcf.gz.tbi
similarity index 100%
rename from debian/upstream.docs/genotypes.chr22.vcf.gz.tbi
rename to debian/upstream.example/genotypes.chr22.vcf.gz.tbi
--
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