[med-svn] [axe-demultiplexer] branch master updated (4e392f2 -> 03269b2)
Andreas Tille
tille at debian.org
Sun Dec 4 08:29:13 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository axe-demultiplexer.
from 4e392f2 d/watch: version=4 (as a flag that watch file was verified recently)
new b53b592 New upstream version 0.3.2+dfsg1
new e0ce682 Merge tag 'upstream/0.3.2+dfsg1'
new 7fa3f82 Really remove src/libqes from upstream source (by just recreating upstream tarball according to Files-Excluded)
new bc6d0d3 Hardening=+all
new a00a1ff Install test script also as user accessible test
new 03269b2 Upload to unstable
The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
debian/README.test | 8 +
debian/changelog | 4 +-
debian/docs | 2 +
debian/rules | 8 +
src/libqes/.gitignore | 12 -
src/libqes/.gitmodules | 0
src/libqes/.travis.yml | 35 -
src/libqes/AUTHORS | 1 -
src/libqes/CMakeLists.txt | 147 -
src/libqes/LICENSE | 619 ---
src/libqes/README.md | 31 -
src/libqes/TODO.md | 11 -
src/libqes/cmake-modules/CodeCoverage.cmake | 158 -
src/libqes/cmake-modules/FindLIBQES.cmake | 97 -
.../cmake-modules/GetGitRevisionDescription.cmake | 130 -
.../GetGitRevisionDescription.cmake.in | 38 -
src/libqes/cmake-modules/GitSemVer.cmake | 49 -
src/libqes/src/CMakeLists.txt | 27 -
src/libqes/src/crc.c | 101 -
src/libqes/src/crc.h | 46 -
src/libqes/src/qes.h | 42 -
src/libqes/src/qes_compat.c | 82 -
src/libqes/src/qes_compat.h | 45 -
src/libqes/src/qes_config.h.in | 92 -
src/libqes/src/qes_file.c | 520 ---
src/libqes/src/qes_file.h | 229 --
src/libqes/src/qes_libgnu.c | 32 -
src/libqes/src/qes_libgnu.h | 44 -
src/libqes/src/qes_log.c | 267 --
src/libqes/src/qes_log.h | 166 -
src/libqes/src/qes_match.c | 99 -
src/libqes/src/qes_match.h | 66 -
src/libqes/src/qes_seq.c | 232 --
src/libqes/src/qes_seq.h | 219 --
src/libqes/src/qes_seqfile.c | 327 --
src/libqes/src/qes_seqfile.h | 240 --
src/libqes/src/qes_sequtil.c | 272 --
src/libqes/src/qes_sequtil.h | 39 -
src/libqes/src/qes_str.c | 52 -
src/libqes/src/qes_str.h | 184 -
src/libqes/src/qes_util.c | 75 -
src/libqes/src/qes_util.h | 250 --
src/libqes/test/CMakeLists.txt | 45 -
src/libqes/test/benchmarks.c | 311 --
src/libqes/test/data/bad_diff_lens.fastq | 4 -
src/libqes/test/data/bad_nohdr.fastq | 3 -
src/libqes/test/data/bad_noqual.fastq | 3 -
src/libqes/test/data/bad_noqualhdrchr.fastq | 4 -
src/libqes/test/data/bad_noqualhdreol.fastq | 3 -
src/libqes/test/data/empty.fastq | 1 -
src/libqes/test/data/empty.txt | 0
src/libqes/test/data/loremipsum.txt | 11 -
src/libqes/test/data/loremipsum.txt.gz | Bin 427 -> 0 bytes
src/libqes/test/data/nocomment.fasta | 5 -
src/libqes/test/data/random.bin | Bin 8192 -> 0 bytes
src/libqes/test/data/test.fasta | 4061 --------------------
src/libqes/test/data/test.fastq | 4000 -------------------
src/libqes/test/data/test.fastq.bz2 | Bin 17766 -> 0 bytes
src/libqes/test/data/test.fastq.gz | Bin 24811 -> 0 bytes
src/libqes/test/data/test_large.fasta.gz | Bin 317571 -> 0 bytes
src/libqes/test/data/truth/log_test.txt | 2 -
src/libqes/test/data/truth/qes_seq_print.fa | 2 -
src/libqes/test/data/truth/qes_seq_print.fq | 4 -
src/libqes/test/helpers.c | 207 -
src/libqes/test/helpers.h | 56 -
src/libqes/test/kseq.h | 235 --
src/libqes/test/kseqcat.c | 41 -
src/libqes/test/logdemo.c | 50 -
src/libqes/test/qes_seqcat.c | 30 -
src/libqes/test/qes_seqprint.c | 21 -
src/libqes/test/test.c | 80 -
src/libqes/test/test_file.c | 446 ---
src/libqes/test/test_helpers.c | 70 -
src/libqes/test/test_log.c | 189 -
src/libqes/test/test_match.c | 105 -
src/libqes/test/test_seq.c | 500 ---
src/libqes/test/test_seqcats.sh | 34 -
src/libqes/test/test_seqfile.c | 418 --
src/libqes/test/test_sequtil.c | 67 -
src/libqes/test/test_util.c | 161 -
src/libqes/test/testdata.c | 160 -
src/libqes/test/testdata.h | 65 -
src/libqes/test/tests.h | 57 -
src/libqes/test/tinytest/tinytest.c | 493 ---
src/libqes/test/tinytest/tinytest.h | 100 -
src/libqes/test/tinytest/tinytest_macros.h | 199 -
src/libqes/util/make_codon_list.py | 38 -
src/libqes/util/make_codon_map.py | 21 -
88 files changed, 21 insertions(+), 17379 deletions(-)
create mode 100644 debian/README.test
create mode 100644 debian/docs
delete mode 100644 src/libqes/.gitignore
delete mode 100644 src/libqes/.gitmodules
delete mode 100644 src/libqes/.travis.yml
delete mode 100644 src/libqes/AUTHORS
delete mode 100644 src/libqes/CMakeLists.txt
delete mode 100644 src/libqes/LICENSE
delete mode 100644 src/libqes/README.md
delete mode 100644 src/libqes/TODO.md
delete mode 100644 src/libqes/cmake-modules/CodeCoverage.cmake
delete mode 100644 src/libqes/cmake-modules/FindLIBQES.cmake
delete mode 100644 src/libqes/cmake-modules/GetGitRevisionDescription.cmake
delete mode 100644 src/libqes/cmake-modules/GetGitRevisionDescription.cmake.in
delete mode 100644 src/libqes/cmake-modules/GitSemVer.cmake
delete mode 100644 src/libqes/src/CMakeLists.txt
delete mode 100644 src/libqes/src/crc.c
delete mode 100644 src/libqes/src/crc.h
delete mode 100644 src/libqes/src/qes.h
delete mode 100644 src/libqes/src/qes_compat.c
delete mode 100644 src/libqes/src/qes_compat.h
delete mode 100644 src/libqes/src/qes_config.h.in
delete mode 100644 src/libqes/src/qes_file.c
delete mode 100644 src/libqes/src/qes_file.h
delete mode 100644 src/libqes/src/qes_libgnu.c
delete mode 100644 src/libqes/src/qes_libgnu.h
delete mode 100644 src/libqes/src/qes_log.c
delete mode 100644 src/libqes/src/qes_log.h
delete mode 100644 src/libqes/src/qes_match.c
delete mode 100644 src/libqes/src/qes_match.h
delete mode 100644 src/libqes/src/qes_seq.c
delete mode 100644 src/libqes/src/qes_seq.h
delete mode 100644 src/libqes/src/qes_seqfile.c
delete mode 100644 src/libqes/src/qes_seqfile.h
delete mode 100644 src/libqes/src/qes_sequtil.c
delete mode 100644 src/libqes/src/qes_sequtil.h
delete mode 100644 src/libqes/src/qes_str.c
delete mode 100644 src/libqes/src/qes_str.h
delete mode 100644 src/libqes/src/qes_util.c
delete mode 100644 src/libqes/src/qes_util.h
delete mode 100644 src/libqes/test/CMakeLists.txt
delete mode 100644 src/libqes/test/benchmarks.c
delete mode 100644 src/libqes/test/data/bad_diff_lens.fastq
delete mode 100644 src/libqes/test/data/bad_nohdr.fastq
delete mode 100644 src/libqes/test/data/bad_noqual.fastq
delete mode 100644 src/libqes/test/data/bad_noqualhdrchr.fastq
delete mode 100644 src/libqes/test/data/bad_noqualhdreol.fastq
delete mode 100644 src/libqes/test/data/empty.fastq
delete mode 100644 src/libqes/test/data/empty.txt
delete mode 100644 src/libqes/test/data/loremipsum.txt
delete mode 100644 src/libqes/test/data/loremipsum.txt.gz
delete mode 100644 src/libqes/test/data/nocomment.fasta
delete mode 100644 src/libqes/test/data/random.bin
delete mode 100644 src/libqes/test/data/test.fasta
delete mode 100644 src/libqes/test/data/test.fastq
delete mode 100644 src/libqes/test/data/test.fastq.bz2
delete mode 100644 src/libqes/test/data/test.fastq.gz
delete mode 100644 src/libqes/test/data/test_large.fasta.gz
delete mode 100644 src/libqes/test/data/truth/log_test.txt
delete mode 100644 src/libqes/test/data/truth/qes_seq_print.fa
delete mode 100644 src/libqes/test/data/truth/qes_seq_print.fq
delete mode 100644 src/libqes/test/helpers.c
delete mode 100644 src/libqes/test/helpers.h
delete mode 100644 src/libqes/test/kseq.h
delete mode 100644 src/libqes/test/kseqcat.c
delete mode 100644 src/libqes/test/logdemo.c
delete mode 100644 src/libqes/test/qes_seqcat.c
delete mode 100644 src/libqes/test/qes_seqprint.c
delete mode 100644 src/libqes/test/test.c
delete mode 100644 src/libqes/test/test_file.c
delete mode 100644 src/libqes/test/test_helpers.c
delete mode 100644 src/libqes/test/test_log.c
delete mode 100644 src/libqes/test/test_match.c
delete mode 100644 src/libqes/test/test_seq.c
delete mode 100644 src/libqes/test/test_seqcats.sh
delete mode 100644 src/libqes/test/test_seqfile.c
delete mode 100644 src/libqes/test/test_sequtil.c
delete mode 100644 src/libqes/test/test_util.c
delete mode 100644 src/libqes/test/testdata.c
delete mode 100644 src/libqes/test/testdata.h
delete mode 100644 src/libqes/test/tests.h
delete mode 100644 src/libqes/test/tinytest/tinytest.c
delete mode 100644 src/libqes/test/tinytest/tinytest.h
delete mode 100644 src/libqes/test/tinytest/tinytest_macros.h
delete mode 100644 src/libqes/util/make_codon_list.py
delete mode 100644 src/libqes/util/make_codon_map.py
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