[med-svn] [axe-demultiplexer] 02/06: Merge tag 'upstream/0.3.2+dfsg1'

[Andreas Tille]

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tille pushed a commit to branch master
in repository axe-demultiplexer.

commit e0ce6822f4b5c8aa839a0abdec76744debd33633
Merge: 4e392f2 b53b592
Author: Andreas Tille <tille at debian.org>
Date:   Sun Dec 4 09:06:48 2016 +0100

    Merge tag 'upstream/0.3.2+dfsg1'
    
    Upstream version 0.3.2+dfsg1

 src/libqes/.gitignore                              |   12 -
 src/libqes/.gitmodules                             |    0
 src/libqes/.travis.yml                             |   35 -
 src/libqes/AUTHORS                                 |    1 -
 src/libqes/CMakeLists.txt                          |  147 -
 src/libqes/LICENSE                                 |  619 ---
 src/libqes/README.md                               |   31 -
 src/libqes/TODO.md                                 |   11 -
 src/libqes/cmake-modules/CodeCoverage.cmake        |  158 -
 src/libqes/cmake-modules/FindLIBQES.cmake          |   97 -
 .../cmake-modules/GetGitRevisionDescription.cmake  |  130 -
 .../GetGitRevisionDescription.cmake.in             |   38 -
 src/libqes/cmake-modules/GitSemVer.cmake           |   49 -
 src/libqes/src/CMakeLists.txt                      |   27 -
 src/libqes/src/crc.c                               |  101 -
 src/libqes/src/crc.h                               |   46 -
 src/libqes/src/qes.h                               |   42 -
 src/libqes/src/qes_compat.c                        |   82 -
 src/libqes/src/qes_compat.h                        |   45 -
 src/libqes/src/qes_config.h.in                     |   92 -
 src/libqes/src/qes_file.c                          |  520 ---
 src/libqes/src/qes_file.h                          |  229 --
 src/libqes/src/qes_libgnu.c                        |   32 -
 src/libqes/src/qes_libgnu.h                        |   44 -
 src/libqes/src/qes_log.c                           |  267 --
 src/libqes/src/qes_log.h                           |  166 -
 src/libqes/src/qes_match.c                         |   99 -
 src/libqes/src/qes_match.h                         |   66 -
 src/libqes/src/qes_seq.c                           |  232 --
 src/libqes/src/qes_seq.h                           |  219 --
 src/libqes/src/qes_seqfile.c                       |  327 --
 src/libqes/src/qes_seqfile.h                       |  240 --
 src/libqes/src/qes_sequtil.c                       |  272 --
 src/libqes/src/qes_sequtil.h                       |   39 -
 src/libqes/src/qes_str.c                           |   52 -
 src/libqes/src/qes_str.h                           |  184 -
 src/libqes/src/qes_util.c                          |   75 -
 src/libqes/src/qes_util.h                          |  250 --
 src/libqes/test/CMakeLists.txt                     |   45 -
 src/libqes/test/benchmarks.c                       |  311 --
 src/libqes/test/data/bad_diff_lens.fastq           |    4 -
 src/libqes/test/data/bad_nohdr.fastq               |    3 -
 src/libqes/test/data/bad_noqual.fastq              |    3 -
 src/libqes/test/data/bad_noqualhdrchr.fastq        |    4 -
 src/libqes/test/data/bad_noqualhdreol.fastq        |    3 -
 src/libqes/test/data/empty.fastq                   |    1 -
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 src/libqes/test/data/test.fastq                    | 4000 -------------------
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 src/libqes/test/data/test_large.fasta.gz           |  Bin 317571 -> 0 bytes
 src/libqes/test/data/truth/log_test.txt            |    2 -
 src/libqes/test/data/truth/qes_seq_print.fa        |    2 -
 src/libqes/test/data/truth/qes_seq_print.fq        |    4 -
 src/libqes/test/helpers.c                          |  207 -
 src/libqes/test/helpers.h                          |   56 -
 src/libqes/test/kseq.h                             |  235 --
 src/libqes/test/kseqcat.c                          |   41 -
 src/libqes/test/logdemo.c                          |   50 -
 src/libqes/test/qes_seqcat.c                       |   30 -
 src/libqes/test/qes_seqprint.c                     |   21 -
 src/libqes/test/test.c                             |   80 -
 src/libqes/test/test_file.c                        |  446 ---
 src/libqes/test/test_helpers.c                     |   70 -
 src/libqes/test/test_log.c                         |  189 -
 src/libqes/test/test_match.c                       |  105 -
 src/libqes/test/test_seq.c                         |  500 ---
 src/libqes/test/test_seqcats.sh                    |   34 -
 src/libqes/test/test_seqfile.c                     |  418 --
 src/libqes/test/test_sequtil.c                     |   67 -
 src/libqes/test/test_util.c                        |  161 -
 src/libqes/test/testdata.c                         |  160 -
 src/libqes/test/testdata.h                         |   65 -
 src/libqes/test/tests.h                            |   57 -
 src/libqes/test/tinytest/tinytest.c                |  493 ---
 src/libqes/test/tinytest/tinytest.h                |  100 -
 src/libqes/test/tinytest/tinytest_macros.h         |  199 -
 src/libqes/util/make_codon_list.py                 |   38 -
 src/libqes/util/make_codon_map.py                  |   21 -
 84 files changed, 17378 deletions(-)

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