[med-svn] [axe-demultiplexer] branch upstream updated (bd3dee8 -> b53b592)
Andreas Tille
tille at debian.org
Sun Dec 4 08:29:16 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch upstream
in repository axe-demultiplexer.
from bd3dee8 New upstream version 0.3.2+dfsg
new b53b592 New upstream version 0.3.2+dfsg1
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
src/libqes/.gitignore | 12 -
src/libqes/.gitmodules | 0
src/libqes/.travis.yml | 35 -
src/libqes/AUTHORS | 1 -
src/libqes/CMakeLists.txt | 147 -
src/libqes/LICENSE | 619 ---
src/libqes/README.md | 31 -
src/libqes/TODO.md | 11 -
src/libqes/cmake-modules/CodeCoverage.cmake | 158 -
src/libqes/cmake-modules/FindLIBQES.cmake | 97 -
.../cmake-modules/GetGitRevisionDescription.cmake | 130 -
.../GetGitRevisionDescription.cmake.in | 38 -
src/libqes/cmake-modules/GitSemVer.cmake | 49 -
src/libqes/src/CMakeLists.txt | 27 -
src/libqes/src/crc.c | 101 -
src/libqes/src/crc.h | 46 -
src/libqes/src/qes.h | 42 -
src/libqes/src/qes_compat.c | 82 -
src/libqes/src/qes_compat.h | 45 -
src/libqes/src/qes_config.h.in | 92 -
src/libqes/src/qes_file.c | 520 ---
src/libqes/src/qes_file.h | 229 --
src/libqes/src/qes_libgnu.c | 32 -
src/libqes/src/qes_libgnu.h | 44 -
src/libqes/src/qes_log.c | 267 --
src/libqes/src/qes_log.h | 166 -
src/libqes/src/qes_match.c | 99 -
src/libqes/src/qes_match.h | 66 -
src/libqes/src/qes_seq.c | 232 --
src/libqes/src/qes_seq.h | 219 --
src/libqes/src/qes_seqfile.c | 327 --
src/libqes/src/qes_seqfile.h | 240 --
src/libqes/src/qes_sequtil.c | 272 --
src/libqes/src/qes_sequtil.h | 39 -
src/libqes/src/qes_str.c | 52 -
src/libqes/src/qes_str.h | 184 -
src/libqes/src/qes_util.c | 75 -
src/libqes/src/qes_util.h | 250 --
src/libqes/test/CMakeLists.txt | 45 -
src/libqes/test/benchmarks.c | 311 --
src/libqes/test/data/bad_diff_lens.fastq | 4 -
src/libqes/test/data/bad_nohdr.fastq | 3 -
src/libqes/test/data/bad_noqual.fastq | 3 -
src/libqes/test/data/bad_noqualhdrchr.fastq | 4 -
src/libqes/test/data/bad_noqualhdreol.fastq | 3 -
src/libqes/test/data/empty.fastq | 1 -
src/libqes/test/data/empty.txt | 0
src/libqes/test/data/loremipsum.txt | 11 -
src/libqes/test/data/loremipsum.txt.gz | Bin 427 -> 0 bytes
src/libqes/test/data/nocomment.fasta | 5 -
src/libqes/test/data/random.bin | Bin 8192 -> 0 bytes
src/libqes/test/data/test.fasta | 4061 --------------------
src/libqes/test/data/test.fastq | 4000 -------------------
src/libqes/test/data/test.fastq.bz2 | Bin 17766 -> 0 bytes
src/libqes/test/data/test.fastq.gz | Bin 24811 -> 0 bytes
src/libqes/test/data/test_large.fasta.gz | Bin 317571 -> 0 bytes
src/libqes/test/data/truth/log_test.txt | 2 -
src/libqes/test/data/truth/qes_seq_print.fa | 2 -
src/libqes/test/data/truth/qes_seq_print.fq | 4 -
src/libqes/test/helpers.c | 207 -
src/libqes/test/helpers.h | 56 -
src/libqes/test/kseq.h | 235 --
src/libqes/test/kseqcat.c | 41 -
src/libqes/test/logdemo.c | 50 -
src/libqes/test/qes_seqcat.c | 30 -
src/libqes/test/qes_seqprint.c | 21 -
src/libqes/test/test.c | 80 -
src/libqes/test/test_file.c | 446 ---
src/libqes/test/test_helpers.c | 70 -
src/libqes/test/test_log.c | 189 -
src/libqes/test/test_match.c | 105 -
src/libqes/test/test_seq.c | 500 ---
src/libqes/test/test_seqcats.sh | 34 -
src/libqes/test/test_seqfile.c | 418 --
src/libqes/test/test_sequtil.c | 67 -
src/libqes/test/test_util.c | 161 -
src/libqes/test/testdata.c | 160 -
src/libqes/test/testdata.h | 65 -
src/libqes/test/tests.h | 57 -
src/libqes/test/tinytest/tinytest.c | 493 ---
src/libqes/test/tinytest/tinytest.h | 100 -
src/libqes/test/tinytest/tinytest_macros.h | 199 -
src/libqes/util/make_codon_list.py | 38 -
src/libqes/util/make_codon_map.py | 21 -
84 files changed, 17378 deletions(-)
delete mode 100644 src/libqes/.gitignore
delete mode 100644 src/libqes/.gitmodules
delete mode 100644 src/libqes/.travis.yml
delete mode 100644 src/libqes/AUTHORS
delete mode 100644 src/libqes/CMakeLists.txt
delete mode 100644 src/libqes/LICENSE
delete mode 100644 src/libqes/README.md
delete mode 100644 src/libqes/TODO.md
delete mode 100644 src/libqes/cmake-modules/CodeCoverage.cmake
delete mode 100644 src/libqes/cmake-modules/FindLIBQES.cmake
delete mode 100644 src/libqes/cmake-modules/GetGitRevisionDescription.cmake
delete mode 100644 src/libqes/cmake-modules/GetGitRevisionDescription.cmake.in
delete mode 100644 src/libqes/cmake-modules/GitSemVer.cmake
delete mode 100644 src/libqes/src/CMakeLists.txt
delete mode 100644 src/libqes/src/crc.c
delete mode 100644 src/libqes/src/crc.h
delete mode 100644 src/libqes/src/qes.h
delete mode 100644 src/libqes/src/qes_compat.c
delete mode 100644 src/libqes/src/qes_compat.h
delete mode 100644 src/libqes/src/qes_config.h.in
delete mode 100644 src/libqes/src/qes_file.c
delete mode 100644 src/libqes/src/qes_file.h
delete mode 100644 src/libqes/src/qes_libgnu.c
delete mode 100644 src/libqes/src/qes_libgnu.h
delete mode 100644 src/libqes/src/qes_log.c
delete mode 100644 src/libqes/src/qes_log.h
delete mode 100644 src/libqes/src/qes_match.c
delete mode 100644 src/libqes/src/qes_match.h
delete mode 100644 src/libqes/src/qes_seq.c
delete mode 100644 src/libqes/src/qes_seq.h
delete mode 100644 src/libqes/src/qes_seqfile.c
delete mode 100644 src/libqes/src/qes_seqfile.h
delete mode 100644 src/libqes/src/qes_sequtil.c
delete mode 100644 src/libqes/src/qes_sequtil.h
delete mode 100644 src/libqes/src/qes_str.c
delete mode 100644 src/libqes/src/qes_str.h
delete mode 100644 src/libqes/src/qes_util.c
delete mode 100644 src/libqes/src/qes_util.h
delete mode 100644 src/libqes/test/CMakeLists.txt
delete mode 100644 src/libqes/test/benchmarks.c
delete mode 100644 src/libqes/test/data/bad_diff_lens.fastq
delete mode 100644 src/libqes/test/data/bad_nohdr.fastq
delete mode 100644 src/libqes/test/data/bad_noqual.fastq
delete mode 100644 src/libqes/test/data/bad_noqualhdrchr.fastq
delete mode 100644 src/libqes/test/data/bad_noqualhdreol.fastq
delete mode 100644 src/libqes/test/data/empty.fastq
delete mode 100644 src/libqes/test/data/empty.txt
delete mode 100644 src/libqes/test/data/loremipsum.txt
delete mode 100644 src/libqes/test/data/loremipsum.txt.gz
delete mode 100644 src/libqes/test/data/nocomment.fasta
delete mode 100644 src/libqes/test/data/random.bin
delete mode 100644 src/libqes/test/data/test.fasta
delete mode 100644 src/libqes/test/data/test.fastq
delete mode 100644 src/libqes/test/data/test.fastq.bz2
delete mode 100644 src/libqes/test/data/test.fastq.gz
delete mode 100644 src/libqes/test/data/test_large.fasta.gz
delete mode 100644 src/libqes/test/data/truth/log_test.txt
delete mode 100644 src/libqes/test/data/truth/qes_seq_print.fa
delete mode 100644 src/libqes/test/data/truth/qes_seq_print.fq
delete mode 100644 src/libqes/test/helpers.c
delete mode 100644 src/libqes/test/helpers.h
delete mode 100644 src/libqes/test/kseq.h
delete mode 100644 src/libqes/test/kseqcat.c
delete mode 100644 src/libqes/test/logdemo.c
delete mode 100644 src/libqes/test/qes_seqcat.c
delete mode 100644 src/libqes/test/qes_seqprint.c
delete mode 100644 src/libqes/test/test.c
delete mode 100644 src/libqes/test/test_file.c
delete mode 100644 src/libqes/test/test_helpers.c
delete mode 100644 src/libqes/test/test_log.c
delete mode 100644 src/libqes/test/test_match.c
delete mode 100644 src/libqes/test/test_seq.c
delete mode 100644 src/libqes/test/test_seqcats.sh
delete mode 100644 src/libqes/test/test_seqfile.c
delete mode 100644 src/libqes/test/test_sequtil.c
delete mode 100644 src/libqes/test/test_util.c
delete mode 100644 src/libqes/test/testdata.c
delete mode 100644 src/libqes/test/testdata.h
delete mode 100644 src/libqes/test/tests.h
delete mode 100644 src/libqes/test/tinytest/tinytest.c
delete mode 100644 src/libqes/test/tinytest/tinytest.h
delete mode 100644 src/libqes/test/tinytest/tinytest_macros.h
delete mode 100644 src/libqes/util/make_codon_list.py
delete mode 100644 src/libqes/util/make_codon_map.py
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/axe-demultiplexer.git
More information about the debian-med-commit
mailing list