[med-svn] [king] branch master updated (f95454e -> 75b420b)
Andreas Tille
tille at debian.org
Sun Dec 4 09:17:59 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository king.
from f95454e debhelper 10
new 40d8644 New upstream version 2.23.161103+dfsg
new 5f613be Merge tag 'upstream/2.23.161103+dfsg'
new 9341f5c New upstream version
new a9954f4 Adapt patches
new 75b420b Ignore appbundler target
The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
chiropraxis/CHANGELOG.html | 15 +
chiropraxis/doc/tools-manual.pdf | Bin 76400 -> 75499 bytes
...s-manual.lyx => tools-manual-lyxformat-345.lyx} | 0
.../tools-manual.html.LyXconv/tools-manual.css | 121 +
.../tools-manual.html.LyXconv/tools-manual.html | 307 +
chiropraxis/doc/work/tools-manual.lyx | 82 +-
chiropraxis/doc/work/tools-manual.pdf | Bin 0 -> 75499 bytes
chiropraxis/resource/chiropraxis/buildnum.props | 4 +-
.../chiropraxis/kingtools/tools-manual.html | 608 +-
.../resource/chiropraxis/rotarama/Ramalyze.help | 2 +
.../chiropraxis/rotarama/rama/general.ndft | Bin 129687 -> 0 bytes
.../chiropraxis/rotarama/rama/glycine.ndft | Bin 129661 -> 0 bytes
.../resource/chiropraxis/rotarama/rama/prepro.ndft | Bin 129676 -> 0 bytes
.../chiropraxis/rotarama/rama/proline.ndft | Bin 129655 -> 0 bytes
.../chiropraxis/rotarama/rama/rama4-template.pdf | 1758 -----
.../resource/chiropraxis/rotarama/rota/asn.ndft | Bin 20786 -> 0 bytes
.../resource/chiropraxis/rotarama/rota/asp.ndft | Bin 10418 -> 0 bytes
.../resource/chiropraxis/rotarama/rota/cys.ndft | Bin 1477 -> 0 bytes
.../resource/chiropraxis/rotarama/rota/gln.ndft | Bin 364563 -> 0 bytes
.../resource/chiropraxis/rotarama/rota/glu.ndft | Bin 186363 -> 0 bytes
.../resource/chiropraxis/rotarama/rota/his.ndft | Bin 20786 -> 0 bytes
.../resource/chiropraxis/rotarama/rota/ile.ndft | Bin 20786 -> 0 bytes
.../resource/chiropraxis/rotarama/rota/leu.ndft | Bin 20808 -> 0 bytes
.../resource/chiropraxis/rotarama/rota/met.ndft | Bin 364563 -> 0 bytes
.../resource/chiropraxis/rotarama/rota/phetyr.ndft | Bin 10426 -> 0 bytes
.../resource/chiropraxis/rotarama/rota/ser.ndft | Bin 1477 -> 0 bytes
.../resource/chiropraxis/rotarama/rota/thr.ndft | Bin 1477 -> 0 bytes
.../resource/chiropraxis/rotarama/rota/trp.ndft | Bin 20786 -> 0 bytes
.../resource/chiropraxis/rotarama/rota/val.ndft | Bin 1477 -> 0 bytes
.../{rota/lys.ndft => rota8000/rota8000-arg.ndft} | Bin 6718540 -> 6718536 bytes
.../rotarama/rota8000/rota8000-asn.ndft | Bin 0 -> 20782 bytes
.../rotarama/rota8000/rota8000-asp.ndft | Bin 0 -> 10414 bytes
.../rotarama/rota8000/rota8000-cys.ndft | Bin 0 -> 1473 bytes
.../rotarama/rota8000/rota8000-gln.ndft | Bin 0 -> 364559 bytes
.../rotarama/rota8000/rota8000-glu.ndft | Bin 0 -> 186359 bytes
.../rotarama/rota8000/rota8000-his.ndft | Bin 0 -> 20782 bytes
.../rotarama/rota8000/rota8000-ile.ndft | Bin 0 -> 20782 bytes
.../rotarama/rota8000/rota8000-leu-clean.ndft | Bin 0 -> 20804 bytes
.../{rota/arg.ndft => rota8000/rota8000-lys.ndft} | Bin 6718540 -> 6718536 bytes
.../rotarama/rota8000/rota8000-met.ndft | Bin 0 -> 364559 bytes
.../rotarama/rota8000/rota8000-phetyr.ndft | Bin 0 -> 10422 bytes
.../{rota/pro.ndft => rota8000/rota8000-pro.ndft} | Bin 1477 -> 1473 bytes
.../rotarama/rota8000/rota8000-ser.ndft | Bin 0 -> 1473 bytes
.../rotarama/rota8000/rota8000-thr.ndft | Bin 0 -> 1473 bytes
.../rotarama/rota8000/rota8000-trp.ndft | Bin 0 -> 20782 bytes
.../rotarama/rota8000/rota8000-val.ndft | Bin 0 -> 1473 bytes
.../rotarama/rota8000/rotamer_names.props | 249 +
.../chiropraxis/sc/sidechain_angles_top8000.props | 404 ++
chiropraxis/resource/chiropraxis/version.props | 2 +-
.../src/chiropraxis/kingtools/BgKinRunner.java | 88 +-
.../src/chiropraxis/kingtools/PhiPsiWindow.java | 6 +-
.../chiropraxis/kingtools/SidechainRotator.java | 14 +-
.../src/chiropraxis/mc/AltConfShearFinder.java | 40 +-
.../src/chiropraxis/mc/AnisoOxygenSearch.java | 202 +-
chiropraxis/src/chiropraxis/mc/BackrubPioneer.java | 66 +-
chiropraxis/src/chiropraxis/mc/ShearFit.java | 237 +-
chiropraxis/src/chiropraxis/mc/ShearPioneer.java | 96 +-
.../mc/{SheetBuilder.java => SheetBuilder2.java} | 236 +-
.../src/chiropraxis/mc/SheetResiduePair.java | 395 ++
chiropraxis/src/chiropraxis/rotarama/Ramalyze.java | 70 +-
chiropraxis/src/chiropraxis/rotarama/Rotalyze.java | 3 +-
chiropraxis/src/chiropraxis/rotarama/Rotamer.java | 87 +-
.../src/chiropraxis/sc/SidechainAngles2.java | 2 +-
debian/changelog | 5 +-
debian/control | 3 +-
debian/patches/ignore_appbundler.patch | 13 +
debian/patches/series | 1 +
debian/patches/use_debian_packaged_jars.patch | 33 +-
driftwood/CHANGELOG.html | 5 +
driftwood/resource/driftwood/buildnum.props | 4 +-
driftwood/resource/driftwood/version.props | 2 +-
driftwood/src/driftwood/moldb2/Disulfide.java | 10 +
driftwood/src/driftwood/moldb2/Disulfides.java | 6 +
driftwood/src/driftwood/moldb2/Model.java | 9 +-
driftwood/src/driftwood/moldb2/ModelState.java | 38 +-
driftwood/src/driftwood/moldb2/PdbDisulfides.java | 9 +-
driftwood/src/driftwood/moldb2/PdbReader.java | 106 +-
.../driftwood/moldb2/PdbSecondaryStructure.java | 12 +-
driftwood/src/driftwood/moldb2/PdbWriter.java | 76 +-
driftwood/src/driftwood/moldb2/Residue.java | 134 +-
.../src/driftwood/moldb2/SecondaryStructure.java | 17 +-
extratools/CHANGELOG.html | 6 +
extratools/resource/META-INF/services/king.Plugin | 1 +
extratools/resource/extratools/buildnum.props | 4 +-
extratools/resource/extratools/version.props | 2 +-
extratools/resource/king/king_prefs | 1 +
.../resource/king/tool/postkin/sc-connect.props | 6 +-
.../tool/data_analysis/HighDimSliderPlugin.java | 19 +
.../src/king/tool/data_analysis/PlottingTool.java | 11 +-
.../src/king/tool/export/PdbExport.java | 172 +-
extratools/src/king/tool/loops/HighLowSliders.java | 14 +-
.../src/king/tool/postkin/KinFudgerTool.java | 45 +-
.../src/king/tool/postkin/PointComparator.java | 77 +-
extratools/src/king/tool/util/KinUtil.java | 35 +-
king/CHANGELOG.html | 12 +
king/README.md | 7 +
king/build.xml | 95 +-
king/doc/king-manual.pdf | Bin 246002 -> 299383 bytes
...ng-manual.lyx => king-manual-lyxformat-345.lyx} | 0
.../work/king-manual.html.LyXconv/king-manual.css | 148 +
.../work/king-manual.html.LyXconv/king-manual.html | 1721 +++++
king/doc/work/king-manual.lyx | 7239 ++++++++++----------
king/probe | Bin 0 -> 501136 bytes
king/resource/king/buildnum.props | 4 +-
king/resource/king/html/king-manual.css | 148 +
king/resource/king/html/king-manual.html | 3488 +++++-----
king/resource/king/images/king-logo.2016.gif | Bin 0 -> 9038 bytes
king/resource/king/images/king-logo.2016.png | Bin 0 -> 42223 bytes
king/resource/king/version.props | 2 +-
king/src/king/BasicTool.java | 2 +-
king/src/king/JoglCanvas.java | 48 +-
king/src/king/KinCanvas.java | 4 +-
king/src/king/KingMain.java | 1 +
king/src/king/ToolBox.java | 2 +-
king/src/king/ToolServices.java | 2 +-
king/src/king/UIMenus.java | 2 +-
king/src/king/core/KGroup.java | 54 +-
king/src/king/core/KList.java | 4 +-
king/src/king/core/Kinemage.java | 15 +-
king/src/king/io/KinfileParser.java | 30 +-
king/src/king/io/KinfileWriter.java | 3 +
king/src/king/painters/JoglEngine3D.java | 84 +-
king/src/king/painters/JoglPainter.java | 16 +-
king/src/king/tool/draw/DrawingTool.java | 2 +-
king/src/king/tool/edmap/EDMapPlotter.java | 14 +-
king/src/king/tool/edmap/EDMapWindow.java | 253 +-
king/work/king-logo.2016.psd | Bin 0 -> 185822 bytes
king/work/mageosX.icns | Bin 0 -> 53163 bytes
molikin/CHANGELOG.html | 9 +-
molikin/resource/molikin/buildnum.props | 4 +-
molikin/src/molikin/RibbonPrinter.java | 19 +-
molikin/src/molikin/StickPrinter.java | 60 +-
molikin/src/molikin/Util.java | 85 +-
.../src/molikin/crayons/AltConfNetworkCrayon.java | 118 +
molikin/src/molikin/crayons/RotaramaCrayon.java | 4 +-
molikin/src/molikin/logic/BallAndStickLogic.java | 48 +-
136 files changed, 11629 insertions(+), 8088 deletions(-)
copy chiropraxis/doc/work/{tools-manual.lyx => tools-manual-lyxformat-345.lyx} (100%)
create mode 100644 chiropraxis/doc/work/tools-manual.html.LyXconv/tools-manual.css
create mode 100644 chiropraxis/doc/work/tools-manual.html.LyXconv/tools-manual.html
create mode 100644 chiropraxis/doc/work/tools-manual.pdf
delete mode 100644 chiropraxis/resource/chiropraxis/rotarama/rama/general.ndft
delete mode 100644 chiropraxis/resource/chiropraxis/rotarama/rama/glycine.ndft
delete mode 100644 chiropraxis/resource/chiropraxis/rotarama/rama/prepro.ndft
delete mode 100644 chiropraxis/resource/chiropraxis/rotarama/rama/proline.ndft
delete mode 100644 chiropraxis/resource/chiropraxis/rotarama/rama/rama4-template.pdf
delete mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota/asn.ndft
delete mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota/asp.ndft
delete mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota/cys.ndft
delete mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota/gln.ndft
delete mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota/glu.ndft
delete mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota/his.ndft
delete mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota/ile.ndft
delete mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota/leu.ndft
delete mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota/met.ndft
delete mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota/phetyr.ndft
delete mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota/ser.ndft
delete mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota/thr.ndft
delete mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota/trp.ndft
delete mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota/val.ndft
rename chiropraxis/resource/chiropraxis/rotarama/{rota/lys.ndft => rota8000/rota8000-arg.ndft} (54%)
create mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota8000/rota8000-asn.ndft
create mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota8000/rota8000-asp.ndft
create mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota8000/rota8000-cys.ndft
create mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota8000/rota8000-gln.ndft
create mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota8000/rota8000-glu.ndft
create mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota8000/rota8000-his.ndft
create mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota8000/rota8000-ile.ndft
create mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota8000/rota8000-leu-clean.ndft
rename chiropraxis/resource/chiropraxis/rotarama/{rota/arg.ndft => rota8000/rota8000-lys.ndft} (63%)
create mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota8000/rota8000-met.ndft
create mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota8000/rota8000-phetyr.ndft
rename chiropraxis/resource/chiropraxis/rotarama/{rota/pro.ndft => rota8000/rota8000-pro.ndft} (64%)
create mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota8000/rota8000-ser.ndft
create mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota8000/rota8000-thr.ndft
create mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota8000/rota8000-trp.ndft
create mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota8000/rota8000-val.ndft
create mode 100644 chiropraxis/resource/chiropraxis/rotarama/rota8000/rotamer_names.props
create mode 100644 chiropraxis/resource/chiropraxis/sc/sidechain_angles_top8000.props
copy chiropraxis/src/chiropraxis/mc/{SheetBuilder.java => SheetBuilder2.java} (85%)
create mode 100644 chiropraxis/src/chiropraxis/mc/SheetResiduePair.java
create mode 100644 debian/patches/ignore_appbundler.patch
copy king/src/king/tool/export/PdfExport.java => extratools/src/king/tool/export/PdbExport.java (51%)
create mode 100644 king/README.md
copy king/doc/work/{king-manual.lyx => king-manual-lyxformat-345.lyx} (100%)
create mode 100644 king/doc/work/king-manual.html.LyXconv/king-manual.css
create mode 100644 king/doc/work/king-manual.html.LyXconv/king-manual.html
create mode 100644 king/probe
create mode 100644 king/resource/king/html/king-manual.css
create mode 100644 king/resource/king/images/king-logo.2016.gif
create mode 100644 king/resource/king/images/king-logo.2016.png
create mode 100644 king/work/king-logo.2016.psd
create mode 100644 king/work/mageosX.icns
create mode 100644 molikin/src/molikin/crayons/AltConfNetworkCrayon.java
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/king.git
More information about the debian-med-commit
mailing list