[med-svn] [vsearch] branch master updated (74d8038 -> 865471f)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository vsearch.

      from  74d8038   New upstream version
       new  cc668cc   New upstream version 2.3.0
       new  f1e6ef8   Merge tag 'upstream/2.3.0'
       new  9ada5f7   New upstream version
       new  fbd7d34   New upstream version
       new  34bca89   Imported Upstream version 2.3.2
       new  e58cc79   Merge tag 'upstream/2.3.2'
       new  0fb37a6   New upstream version
       new  6582e3f   debhelper 10
       new  75e83ca   d/watch: version=4
       new  865471f   Close bug and upload to unstable

The 10 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 README.md                          |  110 +---
 configure.ac                       |    2 +-
 debian/changelog                   |   15 +
 debian/compat                      |    2 +-
 debian/control                     |    2 +-
 debian/patches/compilerflags.patch |    2 +-
 debian/watch                       |    2 +-
 man/vsearch.1                      | 1241 ++++++++++++++++++++++++------------
 src/Makefile.am                    |    2 +
 src/align_simd.cc                  |   30 +-
 src/allpairs.cc                    |    6 +-
 src/chimera.cc                     |    4 +-
 src/cluster.cc                     |  129 +++-
 src/derep.cc                       |   26 +-
 src/fasta.cc                       |    2 +
 src/fastq.cc                       |    4 +
 src/fastqops.cc                    |  113 ++--
 src/fastqops.h                     |    3 +-
 src/linmemalign.cc                 |   17 +-
 src/linmemalign.h                  |    2 +
 src/mergepairs.cc                  |    4 +-
 src/otutable.cc                    |  405 ++++++++++++
 src/{arch.h => otutable.h}         |   10 +-
 src/results.cc                     |   15 +-
 src/results.h                      |    3 +-
 src/search.cc                      |   67 +-
 src/searchcore.cc                  |   66 +-
 src/searchcore.h                   |    4 +-
 src/searchexact.cc                 |   73 ++-
 src/vsearch.cc                     |  358 +++++++----
 src/vsearch.h                      |    8 +
 test/unclassified.sh               |  356 +++++++++++
 32 files changed, 2308 insertions(+), 775 deletions(-)
 create mode 100644 src/otutable.cc
 copy src/{arch.h => otutable.h} (88%)
 create mode 100644 test/unclassified.sh

-- 
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