[med-svn] [artemis] 03/06: use lang3

[Sascha Steinbiss]

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satta pushed a commit to branch 6_0_17_fix
in repository artemis.

commit ecf67fef9ff39b0e2eda5166fec97984c04b892f
Author: Sascha Steinbiss <satta at debian.org>
Date:   Wed Dec 7 23:37:09 2016 +0000

    use lang3
---
 debian/control                 |  1 +
 debian/patches/series          |  1 +
 debian/patches/use-lang3.patch | 11 +++++++++++
 debian/rules                   |  1 +
 4 files changed, 14 insertions(+)

diff --git a/debian/control b/debian/control
index 09e7462..1bf03cc 100644
--- a/debian/control
+++ b/debian/control
@@ -16,6 +16,7 @@ Build-Depends:
 	picard-tools,
 	libhtsjdk-java,
 	libcommons-net-java,
+	libcommons-lang3-java,
 	libbatik-java,
 	jemboss,
 # For tests
diff --git a/debian/patches/series b/debian/patches/series
index 9e6f070..237ba3a 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -5,3 +5,4 @@ CRAMReferenceSequenceFile.patch
 java-8-sort.patch
 picard-api-change.patch
 htsjdk-api-change.patch
+use-lang3.patch
diff --git a/debian/patches/use-lang3.patch b/debian/patches/use-lang3.patch
new file mode 100644
index 0000000..4441b30
--- /dev/null
+++ b/debian/patches/use-lang3.patch
@@ -0,0 +1,11 @@
+--- a/uk/ac/sanger/artemis/io/GFF3Encoder.java
++++ b/uk/ac/sanger/artemis/io/GFF3Encoder.java
+@@ -22,7 +22,7 @@
+ 
+ package uk.ac.sanger.artemis.io;
+ 
+-import org.apache.commons.lang.StringUtils;
++import org.apache.commons.lang3.StringUtils;
+ 
+ public class GFF3Encoder {
+   public static final String mapChars[] = { "%", "&", ",", ";", "=", "\t", "\n", "\r" };
diff --git a/debian/rules b/debian/rules
index a6c2fed..bdb514d 100755
--- a/debian/rules
+++ b/debian/rules
@@ -16,6 +16,7 @@ CUPBOARD = biojava				\
            picard				\
            htsjdk				\
            commons-net				\
+           commons-lang3			\
            batik-awt-util			\
            batik-dom				\
            batik-ext				\

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