[med-svn] [fastqc] 02/05: add some BAM/SAM test data

[Sascha Steinbiss]

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satta pushed a commit to branch master
in repository fastqc.

commit ce4840ca8ec57c52fc144eb9b5695e8f02f0f5e5
Author: Sascha Steinbiss <satta at debian.org>
Date:   Thu Dec 8 19:04:06 2016 +0000

    add some BAM/SAM test data
---
 debian/tests.fastqc/toy.bam | Bin 0 -> 478 bytes
 debian/tests.fastqc/toy.sam |  14 ++++++++++++++
 debian/tests/run-unit-test  |  11 +++++++++++
 3 files changed, 25 insertions(+)

diff --git a/debian/tests.fastqc/toy.bam b/debian/tests.fastqc/toy.bam
new file mode 100644
index 0000000..9e4dc38
Binary files /dev/null and b/debian/tests.fastqc/toy.bam differ
diff --git a/debian/tests.fastqc/toy.sam b/debian/tests.fastqc/toy.sam
new file mode 100644
index 0000000..33449b1
--- /dev/null
+++ b/debian/tests.fastqc/toy.sam
@@ -0,0 +1,14 @@
+ at SQ	SN:ref	LN:45
+ at SQ	SN:ref2	LN:40
+r001	163	ref	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112
+r002	0	ref	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*
+r003	0	ref	9	30	5H6M	*	0	0	AGCTAA	*
+r004	0	ref	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*
+r003	16	ref	29	30	6H5M	*	0	0	TAGGC	*
+r001	83	ref	37	30	9M	=	7	-39	CAGCGCCAT	*
+x1	0	ref2	1	30	20M	*	0	0	aggttttataaaacaaataa	????????????????????
+x2	0	ref2	2	30	21M	*	0	0	ggttttataaaacaaataatt	?????????????????????
+x3	0	ref2	6	30	9M4I13M	*	0	0	ttataaaacAAATaattaagtctaca	??????????????????????????
+x4	0	ref2	10	30	25M	*	0	0	CaaaTaattaagtctacagagcaac	?????????????????????????
+x5	0	ref2	12	30	24M	*	0	0	aaTaattaagtctacagagcaact	????????????????????????
+x6	0	ref2	14	30	23M	*	0	0	Taattaagtctacagagcaacta	???????????????????????
diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test
index 94f46d6..987a6a0 100644
--- a/debian/tests/run-unit-test
+++ b/debian/tests/run-unit-test
@@ -16,5 +16,16 @@ gunzip *.gz
 /usr/bin/fastqc example.fastq
 unzip example_fastqc.zip
 cat example_fastqc/summary.txt
+rm -rf example_fastqc*
+
+/usr/bin/fastqc toy.sam
+unzip toy_fastqc.zip
+cat toy_fastqc/summary.txt
+rm -rf toy_fastqc*
+
+/usr/bin/fastqc toy.bam
+unzip toy_fastqc.zip
+cat toy_fastqc/summary.txt
+rm -rf toy_fastqc*
 
 echo "PASS"

-- 
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