[med-svn] [cwltool] branch upstream updated (c36e784 -> 9bbeaa5)

[Michael Crusoe]

This is an automated email from the git hooks/post-receive script.

misterc-guest pushed a change to branch upstream
in repository cwltool.

      from  c36e784   Imported Upstream version 1.0.20160209222805
       new  5964045   Imported Upstream version 1.0.20160316204054
       new  9bbeaa5   Imported Upstream version 1.0.20160504183010

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 MANIFEST.in                           |   1 +
 PKG-INFO                              |   7 +-
 README.rst                            |   5 +
 cwltool.egg-info/PKG-INFO             |   7 +-
 cwltool.egg-info/SOURCES.txt          |   7 +-
 cwltool.egg-info/requires.txt         |   5 +-
 cwltool/__main__.py                   |   2 +-
 cwltool/aslist.py                     |   5 -
 cwltool/builder.py                    |  74 +++++--
 cwltool/cwlrdf.py                     | 163 +++++++++++++---
 cwltool/cwltest.py                    |  96 ++++++---
 cwltool/docker.py                     |  17 +-
 cwltool/docker_uid.py                 |  23 +--
 cwltool/draft2tool.py                 | 305 +++++++++++++++++++++--------
 cwltool/expression.py                 |  65 +++---
 cwltool/factory.py                    |  13 +-
 cwltool/flatten.py                    |   7 +-
 cwltool/job.py                        | 119 +++++++----
 cwltool/main.py                       | 358 +++++++++++++++++++++-------------
 cwltool/pathmapper.py                 |  62 ++++--
 cwltool/process.py                    | 247 ++++++++++++++++-------
 cwltool/sandboxjs.py                  |  92 ++++++---
 cwltool/schemas/draft-3/Process.yml   |   1 +
 cwltool/schemas/draft-3/contrib.md    |   3 +
 cwltool/schemas/draft-3/invocation.md |  10 +-
 cwltool/stdfsaccess.py                |  22 +++
 cwltool/update.py                     |  98 +++++++---
 cwltool/utils.py                      |  18 ++
 cwltool/workflow.py                   | 204 ++++++++++++-------
 ez_setup.py                           | 332 +++++++++++++++++++++++++++++++
 gittaggers.py                         |  26 +++
 setup.cfg                             |   5 +-
 setup.py                              |   7 +-
 33 files changed, 1797 insertions(+), 609 deletions(-)
 create mode 100644 MANIFEST.in
 delete mode 100644 cwltool/aslist.py
 create mode 100644 cwltool/stdfsaccess.py
 create mode 100644 cwltool/utils.py
 create mode 100644 ez_setup.py
 create mode 100644 gittaggers.py

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